[R] Align two protein sequences using BLAST

[David Winsemius]

On Jan 5, 2010, at 10:46 AM, Tony Chiang wrote:

> You should send this note to the biconductor mailing list rather  
> than the
> R-help. As to your question, please look at the Biostrings  
> bioconductor
> package.

The BioC webpages give a link to the Gmane archive for searching. A  
search on blast protein sequences produced 15 hits and this one seemed  
to be potentially relevant:

http://article.gmane.org/gmane.science.biology.informatics.conductor/26460/match=blast+protein+sequences

There may be other postings in that group of fifteen with relevant  
material. I just wanted to get you going in the right location, which  
is not this list.

-- 
David
>
> On Tue, Jan 5, 2010 at 6:09 AM, Alla Bulashevska <
> alla.bullashevska at fdm.uni-freiburg.de> wrote:
>
>>
>> Dear R users,
>> I would like to align two protein sequences using BLAST
>> (bl2seq). The question is whether this programm have been
>> implemented in R.
>> Thank you for your help,
>> Alla.
>>
>> ______________________________________________

>

David Winsemius, MD
Heritage Laboratories
West Hartford, CT