[R] logical operations with lists

[Greg Snow]

The fact that A and B have dimensions indicates that they are more than simple vectors.  It appears that when you create D you are subsetting columns rather than rows, try:

> D <- C[which(C %in% A ==FALSE),] # note the ","

Hope this helps,

-- 
Gregory (Greg) L. Snow Ph.D.
Statistical Data Center
Intermountain Healthcare
greg.snow at imail.org
801.408.8111


> -----Original Message-----
> From: r-help-bounces at r-project.org [mailto:r-help-bounces at r-
> project.org] On Behalf Of Zoppoli, Gabriele (NIH/NCI) [G]
> Sent: Friday, February 12, 2010 3:58 PM
> To: r-help at r-project.org
> Subject: Re: [R] logical operations with lists
> 
> I'm sorry but here's what I get:
> 
> > A[1:10,]
>  [1] UQCRC1 IDH3B  PDHA1  SUCLA2 COX5B  SDHB   SDHA   MDH2   DLD
> COQ7
> 
> > dim(A)
> [1] 1013    1
> 
> > B[1:10,]
>  [1] 3.8-1.2 3.8-1.3 3.8-1.4 3.8-1.5 5-HT3c2 A1BG    A1CF    A2BP1
> A2LD1   A2M
> 
> > dim(B)
> [1] 55546     1
> 
> > C<-rbind(A,B)
> > dim(C)
> [1] 56559     1
> 
> > D <- C[which(C %in% A ==FALSE)]
> > dim(D)
> [1] 56559     0
> 
> and so with any other proposed method.
> 
> I imported the list A and B this way:
> 
> > A<-as.vector(read.delim("E:/A.txt",sep="\t",header=FALSE))
> 
> and then removed the redundant rows with:
> 
> > A<-unique(A)
> 
> Guess I'm doing something really wrong here... Sorry for the
> inexperience, I'm trying to improve...
> 
> 
> 
> 
> 
> Gabriele Zoppoli, MD
> Ph.D. Fellow, Experimental and Clinical Oncology and Hematology,
> University of Genova, Genova, Italy
> Guest Researcher, LMP, NCI, NIH, Bethesda MD
> 
> Work: 301-451-8575
> Mobile: 301-204-5642
> Email: zoppolig at mail.nih.gov
> ________________________________________
> From: jbreichel at gmail.com [jbreichel at gmail.com] On Behalf Of Jonathan
> [jonsleepy at gmail.com]
> Sent: Friday, February 12, 2010 5:21 PM
> To: Zoppoli, Gabriele (NIH/NCI) [G]
> Cc: r-help at r-project.org
> Subject: Re: [R] logical operations with lists
> 
> This is probably not the best way, but (assuming you had vectors and
> not lists, since I'm not sure what your list looks like):
> 
> C <- B[which(B %in% A ==FALSE)]
> 
> Regards,
> Jonathan
> 
> 
> On Fri, Feb 12, 2010 at 5:06 PM, Zoppoli, Gabriele (NIH/NCI) [G]
> <zoppolig at mail.nih.gov> wrote:
> > Sorry, maybe it's easy but I haven't found anything useful:
> >
> > how can I obtain a list C that contains all the members in the list B
> that are not in list A? This are lists of nanes, not numbers!
> >
> > Thank you
> >
> >
> > Gabriele Zoppoli, MD
> > Ph.D. Fellow, Experimental and Clinical Oncology and Hematology,
> University of Genova, Genova, Italy
> > Guest Researcher, LMP, NCI, NIH, Bethesda MD
> >
> > Work: 301-451-8575
> > Mobile: 301-204-5642
> > Email: zoppolig at mail.nih.gov
> > ______________________________________________
> > R-help at r-project.org mailing list
> > https://stat.ethz.ch/mailman/listinfo/r-help
> > PLEASE do read the posting guide http://www.R-project.org/posting-
> guide.html
> > and provide commented, minimal, self-contained, reproducible code.
> >
> 
> ______________________________________________
> R-help at r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide http://www.R-project.org/posting-
> guide.html
> and provide commented, minimal, self-contained, reproducible code.