[R] Reading raw intensity data from getGEO's gse object
mtmorgan at fhcrc.org
Thu Feb 11 20:25:52 CET 2010
On 02/11/2010 10:35 AM, Dipen wrote:
> Hello, I am trying to download a SOFT matrix file for GSE series to extract
> raw intensity data.
> gse<- getGEO('GSExxxx', AnnotGPL=T)
> However, I am not able to use the function Table(gse), which returns the
> following error
>>>> Error in function (classes, fdef, mtable) :
> unable to find an inherited method for function "Table", for signature
> If I try to use the GDSxxxx file, I get only the adjusted log 2 ratio of
> Is there any way to get to the raw intensity data contained within GSE
Hi Dipen -- please ask questions about Bioconductor packages on the
Bioconductor mailing list.
Include the output of sessionInfo(), but try updating packages as
before posting; I believe this is a known issue that has been addressed.
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