[R] ebimage problems

Gregoire Pau gregoire.pau at embl.de
Wed Dec 15 23:11:00 CET 2010


Dear Kraman,

MagickCoreTerminus() has been present in ImageMagick for quite a long 
time. It seems likely that you're using a very old version of 
ImageMagick. Please install a newer one.

Which versions of ImageMagick, R and EBImage are using ?

Best regards,

Greg
---
Gregoire Pau
EMBL Research officer
http://www.embl.de/~gpau/

On 15/12/2010 15:39, kraman wrote:
>
> Hello, I've been having some trouble working with the aroma package and have
> realized that it's my ebimage is at the root of the problem. The package
> builds but during testing it fails because of an undefined symbol as seen
> below:
>
>
>
> installing to /usr/local/lib64/R/library/EBImage/libs
>
> ** R
>
> ** inst
>
> ** preparing package for lazy loading
>
> ** help
>
> *** installing help indices
>
> ** building package indices ...
>
> ** testing if installed package can be loaded
>
> Error in dyn.load(file, DLLpath = DLLpath, ...) :
>
>    unable to load shared library
> '/usr/local/lib64/R/library/EBImage/libs/EBImage.so':
>
>    /usr/local/lib64/R/library/EBImage/libs/EBImage.so: undefined symbol:
> MagickCoreTerminus
>
> ERROR: loading failed
>
> * removing â/usr/local/lib64/R/library/EBImageâ
>
>
>
> The downloaded packages are in
>
>          â/tmp/RtmpE4xaFL/downloaded_packagesâ
>
> Updating HTML index of packages in '.Library'
>
> Warning message:
>
> In install.packages(pkgs = pkgs, repos = repos, ...) :
>
>    installation of package 'EBImage' had non-zero exit status
>
>
>
> Any suggestions/ feedback would be greatly appreciated!
> Thanks
> -K



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