[R] survival package - calculating probability to survive a given time

Andreas Wittmann andreas_wittmann at gmx.de
Fri Dec 10 20:07:40 CET 2010


Dear R users,

i try to calculate the probabilty to survive a given time by using the 
estimated survival curve by kaplan meier.

What is the right way to do that? as far as is see i cannot use the 
predict-methods from the survival package?

library(survival)
set.seed(1)
time <- cumsum(rexp(1000)/10)
status <- rbinom(1000, 1, 0.5)

## kaplan meier estimates
fit <- survfit(Surv(time, status) ~ 1)
s <- summary(fit)

## 1. possibility to get the probability for surviving 20 units of time
ind <- findInterval(20, s$time)
cbind(s$surv[ind], s$time[ind])

## 2. possibility to get the probability for surviving 20 units of time
ind <- s$time >= 20
sum(ind) / length(ind)

Thanks and best regards

Andreas



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