[R] How to catch both warnings and errors?
Marius Hofert
m_hofert at web.de
Sun Dec 5 21:13:47 CET 2010
Dear expeRts,
I am struggling with warning/error handling.
I would like to call a function which can produce either
a) normal output
b) a warning
c) an error
Since the function is called several (thousand) times in a loop, I would like
to proceed "quietly" and collect the warnings and errors [to deal with them at a
later point].
I have seen constructs with tryCatch (which can deal with errors) and with
withCallingHandlers (which can deal with warnings), but I cannot figure out how
to catch *both* warnings and errors. Below is a minimal example of the function
that is called several times in a large loop. The function should catch warnings
and errors; the former work fine, but with the latter I do not know how to proceed.
The function should *always* return the list with the three components.
How can I achieve this?
Cheers,
Marius
Ps: How can I get the warning/error message in a nice string (as it is printed
in a normal warning/error message)? The approach shown below is somehow ugly.
Basically, I had trouble converting the call w$call to a string.
## based on http://tolstoy.newcastle.edu.au/R/help/04/06/0217.html
## and http://www.mail-archive.com/r-help@r-project.org/msg81380.html
f <- function(x){
## warnings
w.list <- NULL # init warning
w.handler <- function(w){ # warning handler
warn <- simpleWarning(w$message, w$call) # build warning
w.list <<- c(w.list, paste(warn, collapse = " ")) # save warning
invokeRestart("muffleWarning")
}
## errors
e.list <- NULL # init errors
e.handler <- function(e){ # error handler
err <- simpleError(e$message, e$call)
e.list <<- c(e.list, paste(err, collapse = " ")) # save error
}
## execute command
res <- withCallingHandlers(log(x), warning = w.handler, error = e.handler)
## return result with warnings and errors
list(result = res, warning = w.list, error = e.list)
}
f(1)
f(-1)
f("a")
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