[R] DNA sequence Fst

[Charles Roosen]

Hi,

Take a look at the Bioconductor packages, particularly "BSgenome".  If
that isn't specific enough, you might want to try the Bioconductor
mailing list rather than "R-help".

	
http://www.bioconductor.org/packages/release/bioc/html/BSgenome.html

	bioconductor at stat.math.ethz.ch

Best regards,
Charlie Roosen
Mango Solutions

-----Original Message-----
From: r-help-bounces at r-project.org [mailto:r-help-bounces at r-project.org]
On Behalf Of blue jay
Sent: 23 August 2010 12:30
To: r-help at r-project.org
Subject: [R] DNA sequence Fst

Hi,

I want to analyse DNA sequence data (mtDNA) in R as in calculate Fst,
Heterozygosity and such summary statistics. Package Adagenet converts
the
DNA sequence into retaining only retaining the polymorphic sites and
then
calcuates Fst.. but is there any other way to do this? I mean analyse
the
DNA sequence as it is.. and calculate the statistics?


Thanks!

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