[R] Does R always insist on sending plot output to a file?
Matt Shotwell
shotwelm at musc.edu
Thu Aug 19 16:15:45 CEST 2010
Donald,
I was able to 'trick' R into writing plot data to a GNU Linux fifo. I
had forgotten that the fifo will block until there is a process at
either end (a writer and a reader):
At one terminal, create a fifo and set a program to catch output
$ mkfifo Rfifo
$ cat Rfifo
At a second terminal
$ R
> postscript(file="Rfifo")
> plot(0)
> dev.off()
-Matt
On Wed, 2010-08-18 at 23:21 -0400, Matt Shotwell wrote:
> Donald,
>
> At least for the PDF device (I know you asked about png, but I believe
> they are similar), the answer no. Ultimately, this device calls the
> standard C function fopen, and writes its data to the resulting file
> stream.
>
> If you're using GNU Linux, you might trick R into writing to a fifo (a
> named pipe, see 'man fifo'), or some other in-memory device, and read
> from it with another program. My initial experiments with this, however,
> were not successful.
>
> A better solution here, would be to have the various graphics devices
> write to an R connection, as do most other R functions that input and
> output data. In this way, we could write graphics data to a RAW
> connection (rawConnection()), which is essentially a memory buffer.
>
> There are two obvious barriers to this:
> 1. C level I/O routines (e.g. fprintf) are heavily integrated into the
> graphics device code. Hence, accommodating R connections would require
> significant changes.
> 2. The graphics devices are mostly implemented in C, and there is (at
> present) no interface to R connections at the C level.
>
> -Matt
>
> On Wed, 2010-08-18 at 21:49 -0400, Donald Paul Winston wrote:
> > I need to write the output of a R plot to a Java OutputStream. It looks like
> > R insists on sending it's output to a file. Is there anyway to get bytes
> > directly from the output of a plot so I can write it with Java? Writing it
> > to a file is too slow.
> >
> > Is there a parameter in the graphics device function png(..) that directs
> > output to a variable in memory?
> >
> > x <- plot(.) would make sense.
>
--
Matthew S. Shotwell
Graduate Student
Division of Biostatistics and Epidemiology
Medical University of South Carolina
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