[R] creation package

Michael Dewey info at aghmed.fsnet.co.uk
Wed Aug 18 16:49:39 CEST 2010 

At 10:27 18/08/2010, anderson nuel wrote:
>Dear r-help,
>
>No, I find errors in the file C:/Rp/namepackage.Rcheck/00check.txt :
>
>* using log directory 'C:/Rpackage/namepackage.Rcheck'
>* using R version 2.10.1 (2009-12-14)
>* using session charset: ISO8859-1
>* checking for file 'namepackage/DESCRIPTION' ... OK
>* checking extension type ... Package
>* this is package 'namepackage' version '1.0'
>* checking package dependencies ... OK
>* checking if this is a source package ... OK
>* checking for executable files ... OK
>* checking whether package 'namepackage' can be installed ... OK
>* checking package directory ... OK
>* checking for portable file names ... OK
>* checking DESCRIPTION meta-information ... OK
>* checking top-level files ... OK
>* checking index information ... OK
>* checking package subdirectories ... OK
>* checking R files for non-ASCII characters ... OK
>* checking R files for syntax errors ... OK
>* checking whether the package can be loaded ... OK
>* checking whether the package can be loaded with stated dependencies ... OK
>* checking for unstated dependencies in R code ... OK
>* checking S3 generic/method consistency ... OK
>* checking replacement functions ... OK
>* checking foreign function calls ... OK
>* checking R code for possible problems ... NOTE
>comb: no visible global function definition for 'copy_bloc'
>comb: no visible global function definition for 'copy_interl'
>* checking Rd files ... OK
>* checking Rd metadata ... OK
>* checking Rd cross-references ... OK
>* checking for missing documentation entries ... WARNING
>Undocumented code objects:
>   comb learn_comb nchoo
>All user-level objects in a package should have documentation entries.
>See the chapter 'Writing R documentation files' in manual 'Writing R
>Extensions'.
>* checking for code/documentation mismatches ... OK
>* checking Rd \usage sections ... OK
>* checking examples ... ERROR
>Running examples in 'namepackage-Ex.R' failed.
>The error most likely occurred in:
> > ### * RT
> >
> > flush(stderr()); flush(stdout())
> >
> > ### Name: RT
> > ### Title: RT
> > ### Aliases: RT
> >
> > ### ** Examples
> >
> > data(asia)
>Warning in data(asia) : data set 'asia' not found
> > RT(asia, c(2,2,2), c(1,2,3),c("a","b","c" ))
>Error in nrow(data) : object 'x' not found
>Calls: RT -> array -> nrow
>Execution halted
>
>
>I think my problem in creating the package in this: I have a singleglobal
>function (RT) in my package, but inside RT I need to call several other
>function( comb l,earn_comb, nchoo). When I used package.sekeleton, Iput in
>lists all the functions(comb l,earn_comb, nchoo,RT),but in the 'man' I left
>only namepackage-package.Rd and RT.Rd. When I did do this, is it true??

Are you using a namespace?
If not I think it may help you with the warnings about documentation.

The other warning tells you R cannot find asia. You need to make it available.


>Best Regards,
>
>
>
>
>
>
>
>
>
>
>
>2010/8/16, Uwe Ligges <ligges at statistik.tu-dortmund.de>:
> >
> >
> >
> > On 16.08.2010 18:52, anderson nuel wrote:
> >
> >> Dear r-help,
> >>
> >> the file C:/Rp/namepackage.Rcheck/00install.out :
> >>
> >> * install options are ' --no-html'
> >> * installing *source* package 'namepackage' ...
> >> ** R
> >> ** preparing package for lazy loading
> >> ** help
> >> *** installing help indices
> >> ** building package indices ...
> >> ** MD5 sums
> >> * DONE (namepackage)
> >>
> >
> >
> > So it was successful.
> >
> > Uwe
> >
> >
> >
> > Best Regards,
> >>
> >>
> >>
> >>
> >>
> >> 2010/8/14, Uwe Ligges<ligges at statistik.tu-dortmund.de>:
> >>
> >>>
> >>>
> >>>
> >>> On 14.08.2010 11:21, anderson nuel wrote:
> >>>
> >>> Dear r-help,
> >>>>
> >>>> I run R CMD INSTALL :
> >>>>
> >>>> c:\Rp>R CMD INSTALL namepackage
> >>>>
> >>>> *installing to library'c:/PROGRA~1/R/R-210~1-1/library'
> >>>> *installing *source* 'namepackage'...
> >>>> **R
> >>>> **preparing package for lazy loading
> >>>> **help
> >>>> Avis:./man/namepackage-package.Rd:25:'>' inatttendu<e>
> >>>> **installing help indices
> >>>> **building package indices
> >>>> **MD5sums
> >>>> *DONE<namepackage>
> >>>>
> >>>> best
> >>>>
> >>>>
> >>>
> >>> OK, but strange that checking the package fails now in its installation
> >>> checks. Can you send us the file
> >>> C:/Rp/namepackage.Rcheck/00install.out
> >>> please.
> >>>
> >>> Uwe Ligges
> >>>
> >>>
> >>>
> >>>
> >>>
> >>>> 2010/8/13, Uwe Ligges<ligges at statistik.tu-dortmund.de>:
> >>>>
> >>>>
> >>>>> In my previous maiul I asked you to run R CMD INSTALL at first (rather
> >>>>> than
> >>>>> R CMD check).
> >>>>>
> >>>>> You could also look into the mentioned file
> >>>>> C:/Rp/namepackage.Rcheck/00install.out
> >>>>>
> >>>>> But we really need that file to understand what is going on.
> >>>>>
> >>>>> Uwe Ligges
> >>>>>
> >>>>>
> >>>>>
> >>>>>
> >>>>>
> >>>>>
> >>>>> On 13.08.2010 15:12, anderson nuel wrote:
> >>>>>
> >>>>> Dear r-help,
> >>>>>
> >>>>>> I try this command R CMD INSTALL,but still there are errors.
> >>>>>> I look into the installation log file in the namepackage.Rcheck :
> >>>>>> * using log directory 'C:/Rp/namepackage.Rcheck'
> >>>>>> * using R version 2.10.1 (2009-12-14)
> >>>>>> * using session charset: ISO8859-1
> >>>>>> * checking for file 'namepackage/DESCRIPTION' ... OK
> >>>>>> * checking extension type ... Package
> >>>>>> * this is package 'namepackage' version '1.0'
> >>>>>> * checking package dependencies ... OK
> >>>>>> * checking if this is a source package ... OK
> >>>>>> * checking for executable files ... OK
> >>>>>> * checking whether package 'namepackage' can be installed ... ERROR
> >>>>>> Installation failed.
> >>>>>> See 'C:/Rp/namepackage.Rcheck/00install.out' for details.
> >>>>>>  From That , I do not know where is the error
> >>>>>> I have only one function RT, but I need several other functions within
> >>>>>> the RT function, while
> >>>>>> using package.skeleton() I put in the function list seulemnt RT or any
> >>>>>> other functions, or I shall all functions in the same page??
> >>>>>> Best
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>> 2010/7/31, Uwe Ligges<ligges at statistik.tu-dortmund.de
> >>>>>> <mailto:ligges at statistik.tu-dortmund.de>>:
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>>    On 30.07.2010 15:44, anderson nuel wrote:
> >>>>>>
> >>>>>>        Dear r-help,
> >>>>>>
> >>>>>>        I create a package. When I installed this package (I use this
> >>>>>>        command : R
> >>>>>>        CMD check namepackage),I find an error: * checking whether
> >>>>>> package
> >>>>>>        'namepackage' can be installed ... ERROR
> >>>>>>        Installation failed.
> >>>>>>
> >>>>>>    >
> >>>>>>
> >>>>>>        Could you help me to find solution  for this error.
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>>    Well, either take a look into the installation log file in the
> >>>>>>    namepackage.Rcheck directory or start a bit more slowly by just
> >>>>>>    trying to install without a check in the first step by R CMD
> >>>>>> INSTALL.
> >>>>>>
> >>>>>>    Without seeing the installation log, we cannot help either.
> >>>>>>
> >>>>>>    Best,
> >>>>>>    Uwe Ligges
> >>>>>>
> >>>>>>
> >>>>>>        Best Regards
> >>>>>>
> >>>>>>                [[alternative HTML version deleted]]
> >>>>>>
> >>>>>>        ______________________________________________
> >>>>>>        R-help at r-project.org<mailto:R-help at r-project.org>   mailing
> >>>>>> list
> >>>>>>        https://stat.ethz.ch/mailman/listinfo/r-help
> >>>>>>        PLEASE do read the posting guide
> >>>>>> 
> http://www.R-project.org/posting-guide.html<http://www.r-project.org/posting-guide.html>
> >>>>>> <http://www.r-project.org/posting-guide.html>
> >>>>>> <http://www.r-project.org/posting-guide.html>
> >>>>>>        <http://www.r-project.org/posting-guide.html>
> >>>>>>        and provide commented, minimal, self-contained, reproducible
> >>>>>> code.
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>
> >>
>
>         [[alternative HTML version deleted]]

Michael Dewey
http://www.aghmed.fsnet.co.uk

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