[R] PCA analysis, presence-absence of mammals in parks
zloutor
geoffroy.lenoir at gmail.com
Mon Aug 9 23:02:35 CEST 2010
Hi everyone,
So I am trying to see which ecological parameter of different parks in nyc
influence the most the diversity of the medium-sized mammals in those parks.
I have a bunch of different parameters for each park I'm done studying and
the presence (1) and absence (0) of each mammal. I wanted to do a principal
component analysis of those data to know which ones of those parameters are
the most important.
Here is what I have:
Parc PBP VCP PP CP
surfacekm² 0.917 4.64 0.0213 3.4
woodenarea 0.514 0.6355 0.32 0.4952
scrubland 0.0905 0.0412 0.06 0.0498
lawn 0.3654 0.2837 0.50 0.296
lake 0.0028 0.0166 0.12 0.1488
wetareas 0.0273 0.0230 0 0.0102
intertidalearea 0.0283 0 0 0
sportsfields 0.0887 0.2579 0.12 0.1323
humanactivity 0.4196 0.7271 0.23 0.7912
#ofhighways 2 3 0 0
#ofroads 4 22 7 11
distanceA 5.31 4.02 1.61 4.02
distanceB 6.12 4.51 3.7 4.02
distanceC 7.56 5.47 7.72 6.44
distanceD 9.66 9.66 19.31 9.01
AvgPopN 1133 0 5380 6835
AvgPopS 0 7022 5380 4711
AvgPopE 0 3592 8536 4307
AvgPopW 3940 3220 4840 9360
raccoon 1 1 1 1
skunk 1 1 1 1
opossum 1 1 1 0
rabbit 1 1 1 0
groundhog 0 0 0 0
muskrat 0 0 0 0
I get to open the .txt with R but then it gives me something pretty weird
when I try to use the function dudi.pca(parcs)...
Can anyone suggest me how I should to my analysis? I would really really be
thankful for that!
Geo.
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