[R] questions about string handling
karena
dr.jzhou at gmail.com
Thu Aug 5 02:55:53 CEST 2010
Hi, I have a question about the data handling. I have a dataset as following:
ID snp1 snp2 snp3
1001 0/0 1/1 1/1
1002 2/2 3/3 1/1
1003 4/4 3/3 2/2
I want to convert the dataset to the following format:
ID snp1 snp2 snp3
1001 00 AA AA
1002 GG CC AA
1003 TT CC GG
thing to be done:
1) take the '/' off
2) replace the numbers with letters, 0 not change. 1=A, 2=G, 3=C, 4=T
what is the most efficient way to do it?
thanks you very much,
karena
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