[R] R abrupt exit

jacob zjz999 at gmail.com
Fri Apr 2 17:30:20 CEST 2010


Dear Lists:

I recently ran quite annoyance problem while running R on Ubuntu 9.10.
 When running the  program,  the system suddenly exit from  the R
session with the following warnings:

############################ #############
OMP: Hint: This may cause performance degradation and correctness
issues. Set environment variable KMP_DUPLICATE_LIB_OK=TRUE to ignore
this problem and force the program to continue anyway. Please note
that the use of KMP_DUPLICATE_LIB_OK is unsupported and using it may
cause undefined behavior. For more information, please contact
Intel(R) Premier Support.
Aborted
##########################################
I have to restart R again, and all the calculations are being lost.

According to the warnings, I set the environment to true, no good. I
reinstalled the R program again, no good either.   I googled the
problem, it seems that there was no R help on the topic so far.


Any suggestions that the whole OS may have conflicts?  I have only one
copy of the following file on my computer system?

/usr/lib/R/lib/libguide.so


Thanks.

jacob

#############################################################################
>options("KMP_DUPLICATE_LIB_OK")
$KMP_DUPLICATE_LIB_OK
[1] TRUE
> sessionInfo()
R version 2.10.1 (2009-12-14)
x86_64-pc-linux-gnu

locale:
 [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C
 [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8
 [5] LC_MONETARY=C              LC_MESSAGES=en_US.UTF-8
 [7] LC_PAPER=en_US.UTF-8       LC_NAME=C
 [9] LC_ADDRESS=C               LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C

attached base packages:
[1] datasets  grDevices splines   graphics  stats     utils     methods
[8] base

other attached packages:
 [1] Design_2.3-0         Hmisc_3.7-0          survival_2.35-8
 [4] GEOquery_2.11.3      RCurl_1.4-0          bitops_1.0-4.1
 [7] affy_1.24.2          Biobase_2.6.1        preprocessCore_1.8.0
[10] R.methodsS3_1.0.3

loaded via a namespace (and not attached):
[1] affyio_1.14.0  cluster_1.12.1 grid_2.10.1    lattice_0.18-3



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