[R] RSPython can't find module
Simon Frost
sdf22 at cam.ac.uk
Tue Sep 8 17:42:44 CEST 2009
Hi Folks,
After seeing some tips on the web, I managed to get RSPython-0.7-1
installed with R 2.9.0 (on Ubuntu 8.04). I had to get rid of the extra
comma in the PythonPath function in Python.S:
.PythonPath <-
function(path=NULL, merge = TRUE)
{
dirSep <- ifelse(R.version$os == "Win32", ";", ":",)
(remove last comma before bracket)
and I had to manually copy RSPython.so to RSInternal.so in the libs
subdirectory of my RSPython installation. Now RSPython seems to load up
OK, with a couple of warnings:
> require(RSPython)
Loading required package: RSPython
Initialized R-Python interface package.
Warning messages:
1: In .PythonInit() :
the Python callback manager has been registered implicitly using the
defaults (referenceManager())!
2: In getPythonHandler() :
the Python callback manager has been registered implicitly using the
defaults (referenceManager())!
and it works fine for built-in functions:
> .Python("range",0,10)
sys:1: DeprecationWarning: integer argument expected, got float
[1] 0 1 2 3 4 5 6 7 8 9
However, I can't load up any of my own libraries, even though they're in
the PYTHONPATH, and I can load them up in Python without problems.
> sir.py <- .Python("model",.module="sir")
Error in .Python("model", .module = "sir") : No such module
Any help would be most appreciated.
Best wishes
Simon
--
Simon D.W. Frost, D.Phil.
Senior Lecturer
Department of Veterinary Medicine
University of Cambridge
Madingley Road
Cambridge CB3 0ES
U.K.
Tel: +44 (0)1223 764201
Fax: +44 (0)1223 765760
Email: sdf22 at cam.ac.uk
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