[R] Using anova(f1, f2) to compare lmer models yields seemingly erroneous Chisq = 0, p = 1
rapton
mattcomm at gmail.com
Fri Sep 4 18:10:14 CEST 2009
Hello,
I am using R to analyze a large multilevel data set, using
lmer() to model my data, and using anova() to compare the fit of various
models. When I run two models, the output of each model is generated
correctly as far as I can tell (e.g. summary(f1) and summary(f2) for the
multilevel model output look perfectly reasonable), and in this case (see
below) predictor.1 explains vastly more variance in outcome than predictor.2
(R2 = 15% vs. 5% in OLS regression, with very large N). What I am utterly
puzzled by is that when I run an anova comparing the two multilevel model
fits, the Chisq comes back as 0, with p = 1. I am pretty sure that fit #1
(f1) is a much better predictor of the outcome than f2, which is reflected
in the AIC, BIC , and logLik values. Why might anova be giving me this
curious output? How can I fix it? I am sure I am making a dumb error
somewhere, but I cannot figure out what it is. Any help or suggestions
would
be greatly appreciated!
-Matt
> f1 <- (lmer(outcome ~ predictor.1 + (1 | person), data=i))
> f2 <- (lmer(outcome ~ predictor.2 + (1 | person), data=i))
> anova(f1, f2)
Data: i
Models:
f1: outcome ~ predictor.1 + (1 | person)
f2: outcome ~ predictor.2 + (1 | person)
Df AIC BIC logLik Chisq Chi Df Pr(>Chisq)
f1 6 45443 45489 -22715
f2 25 47317 47511 -23633 0 19 1
--
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