[R] Poisson dpois value is too small for double precision thus corrupts loglikelihood
Duncan Murdoch
murdoch at stats.uwo.ca
Tue Oct 27 01:29:54 CET 2009
On 26/10/2009 8:21 PM, R_help Help wrote:
> Hi - I have a likelihood function that involves sums of two possions:
>
> L = a*dpois(Xi,theta1)*dpois(Yi,theta2)+b*(1-c)*a*dpois(Xi,theta1+theta3)*dpois(Yi,theta2)
>
> where a,b,c,theta1,theta2,theta3 are parameters to be estimated.
> (Xi,Yi) are observations. However, Xi and Yi are usually big (>
> 20000). This causes dpois to returns 0 depending on values of theta1,
> theta2 and theta3.
>
> My first question is: is there anyway around this?
>
> My second question is regarding the likelihood function value. Since
> dpois returns 0, my log likelihood becomes infinite and causes problem
> when optimization. Is there any smart way to avoid this?
If you use log=TRUE, you'll get the log density instead of the density,
and you won't get underflow.
Finding the sum of terms whose log you know but whose value you can't
represent is just a little tricky, but you can do it using identities like
log(A + B) = log(A) + log(1 + B/A)
= log(A) + log(1 + exp(log(B) - log(A)))
Duncan Murdoch
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