[R] function to convert lm model to LaTeX equation
Ista Zahn
izahn at psych.rochester.edu
Sun Oct 18 06:38:40 CEST 2009
Dear list,
I've tried several times to wrap my head around the Design library,
without much success. It does some really nice things, but I'm often
uncomfortable because I don't understand exactly what it's doing.
Anyway, one thing I really like is the latex.ols() function, which
converts an R linear model formula to a LaTeX equation.
So, I started writing a latex.lm() function (not actually using
classes at this point, I just named it that for consistency). This
turned out to be easy enough for simple cases (see code below), but
now I'm wondering a) if anyone knows of existing functions that do
this (again, for lm() models, I know I'm reinventing the wheel in as
far as the Design library goes), or if not, b) if anyone has
suggestions for improving the function below.
Thanks,
Ista
### Function to create LaTeX formula from lm() model. Needs amsmath
package in LaTeX. ###
latex.lm <- function(object, file="", math.env=c("$","$"),
estimates="none", abbreviate = TRUE, abbrev.length=8, digits=3) {
# Get and format IV names
co <- c("Int", names(object$coefficients)[-1])
co.n <- gsub("p.*)", "", co)
if(abbreviate == TRUE) {
co.n <- abbreviate(gsub("p.*)", "", co), minlength=abbrev.length)
}
# Get and format DV
m.y <- strsplit((as.character(object$call[2])), " ~ ")[[1]][1]
# Write coefficent labels
b.x <- paste("\\beta_{", co.n ,"}", sep="")
# Write error term
e <- "\\epsilon_i"
# Format coefficint x variable terms
m.x <- sub("}Int","}", paste(b.x, co.n, " + ", sep="", collapse=""))
# If inline estimates convert coefficient labels to values
if(estimates == "inline") {
m.x <- sub("Int", "",
paste(round(object$coefficients,digits=digits), co.n, " + ", sep="",
collapse=""))
m.x <- gsub("\\+ \\-", "-", m.x)
}
# Format regression equation
eqn <- gsub(":", " \\\\\\times ", paste(math.env[1], m.y, " = ",
m.x, e, sep=""))
# Write the opening math mode tag and the model
cat(eqn, file=file)
# If separae estimates format estimates and write them below the model
if(estimates == "separate") {
est <- gsub(":", " \\\\\\times ", paste(b.x, " = ",
round(object$coefficients, digits=digits), ", ", sep="", collapse=""))
cat(", \\\\ \n \\text{where }", substr(est, 1, (nchar(est)-2)), file=file)
}
# Write the closing math mode tag
cat(math.env[2], "\n", file=file)
}
# END latex.lm
Xvar1 <- rnorm(20)
Xvar2 <- rnorm(20)
Xvar3 <- factor(rep(c("A","B"),10))
Y.var <- rnorm(20)
D <- data.frame(Xvar1, Xvar2, Xvar3, Y.var)
x1 <- lm(Y.var ~ pol(Xvar1, 3) + Xvar2*Xvar3, data=D)
latex.lm(x1)
--
Ista Zahn
Graduate student
University of Rochester
Department of Clinical and Social Psychology
http://yourpsyche.org
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