[R] Using ACE in the ape package
Andrew RODRIGUES
Andrew.Rodrigues at univ-montp2.fr
Mon May 11 12:45:13 CEST 2009
Having a problem running the ace command in ape.
After reading my table into R and then putting the names of the rows in the
table in same order as the tree I can't get ace to run and get the message
Erreur dans as.matrix(x) :
dims [produit 25] ne correspond pas à la longueur de l'objet [0]
This is the command I am using and each of the vectors used in the
snalysis.
ERreconstruction <- ace(car, tr, type="discrete", model="SYM")
>car [1] 4 1 7 5 7 7 7 7 7 7 7 7 7 7 7 7 7 7 7 7 7 7 7 7 7 7 7 7 7 1 2 1
> tr
Phylogenetic tree with 32 tips and 31 internal nodes.
Tip labels:
Batis_maritima, Pentadiplandra_brazzeana, Tovaria_pendula, Reseda_lutea,
Tropaeolum_majus, Carica_sp, ...
Rooted; no branch lengths.
Thanks for any help.
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