[R] RMySQL compile

[Jeffrey Horner]

stenka1 at go.com wrote on 03/31/2009 08:11 AM:
> Jeff,
> 
> Thank you so much for responding. I am ready to do a lot of tweaking.
> 
>  From your message it looks like you are asking me to provide 
> assignments on the same line as R CMD but precede the command. I am 
> using bash and the usual thing would be to export those variables and 
> then run R CMD.
> I tried that and configure ignores the variables. If you know where is 
> the actual makefile then I could try to finish this without using R CMD. 
> calling ./configure directly works ( R CMD INSTALL is the problem and I 
> do not know how to look into that)


bash is perfectly capable of running commands preceded with shell 
variables. Show the output, please. Otherwise I'm of no help.

Best,

Jeff

> Stephen C. Bond
> 
> 
> On Mar 31, 2009, *jeff.horner at vanderbilt.edu* wrote:
> 
>     Try this:
> 
>     PKG_CPPFLAGS="-I/usr/mysql/5.0/include/mysql -I/opt/csw/include
>     -I/usr/sfw/include -I/usr/X11/include-I/usr/lib/gtk-2.0/include
>                   -I/usr/local/include" PKG_LIBS="-L/usr/sfw/lib
>     -L/usr/lib  -L/usr/local/lib  -L/opt/csw/lib -lmysqlclient" R CMD
>     INSTALL RMySQL
> 
>     I had to refresh my memory from the inst/INSTALL file on how to do
>     this.
>     You might have to tweak it a bit, and also please send the full output
>     of the command next time.
> 
>     Best,
> 
>     Jeff
> 
>     stenka1 at go.com wrote:
>      >      I am trying to install RMySQL on OpenSolaris and need to
>     pass some options
>      >       to configure.
>      >       Tried the 3 recommended ways of doing it and nothing works,
>     configure
>      >    cannot
>      >       find the headers and the libs.
>      >       I ran configure manually and that worked fine
>      >       ./configure    CC=cc    CFLAGS="-dalign    -KPIC  
>      -xlic_lib=sunperf"
>      >       LDFLAGS="-L/usr/sfw/lib  -L/usr/lib  -L/usr/local/lib
>      -L/opt/csw/lib"
>      >       CPPFLAGS="-I/usr/local/lib/R/include  
>      -I/usr/mysql/5.0/include/mysql
>      >       -I/opt/csw/include        -I/usr/sfw/include      
>      -I/usr/X11/include
>      >       -I/usr/lib/gtk-2.0/include                      
>     -I/usr/local/include"
>      >       --with-mysql-inc="/usr/mysql/include/mysql"
>      >       --with-mysql-lib="/usr/mysql/lib/mysql"
>      >       checking mysql.h usability... yes
>      >       checking mysql.h presence... yes
>      >       checking for mysql.h... yes
>      >       configure: creating ./config.status
>      >       config.status: creating src/Makevars
>      >       but then there is no makefile. Pls advise how to run make
>     manually or
>      >    help
>      >       with the syntax: I tried with quotes after the second = and
>     the first =
>      >    and
>      >       neither worked
>      >       R CMD INSTALL --configure-args=CC=cc
>     --configure-args=CFLAGS="-dalign
>      >    -KPIC
>      >       -xlic_lib=sunperf" --configure-args=LDFLAGS="-L/usr/sfw/lib
>     -L/usr/lib
>      >       -L/usr/local/lib -L/opt/csw/lib"
>      >       --configure-args=CPPFLAGS="-I/usr/local/lib/R/include
>      >       -I/usr/mysql/5.0/include/mysql  -I/opt/csw/include
>      -I/usr/sfw/include
>      >       -I/usr/X11/include   -I/usr/lib/gtk-2.0/include
>      -I/usr/local/include"
>      >       --configure-args="--with-mysql-inc=/usr/mysql/include/mysql"
>      >       --configure-args="--with-mysql-lib=/usr/mysql/lib/mysql"
>      >       RMySQL_0.7-3.tar.gz   ## does not work
>      >    Stephen C. Bond
>      > ______________________________________________
>      > R-help at r-project.org mailing list
>      > https://stat.ethz.ch/mailman/listinfo/r-help
>      > PLEASE do read the posting guide
>     http://www.R-project.org/posting-guide.html
>      > and provide commented, minimal, self-contained, reproducible code.
> 
> 
>     -- 
>     http://biostat.mc.vanderbilt.edu/JeffreyHorner
> 


-- 
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