[R] Need help extracting info from XML file using XML package

[Wacek Kusnierczyk]

Don MacQueen wrote:
> I have an XML file that has within it the coordinates of some polygons
> that I would like to extract and use in R. The polygons are nested
> rather deeply. For example, I found by trial and error that I can
> extract the coordinates of one of them using functions from the XML
> package:
>
>   doc <- xmlInternalTreeParse('doc.kml')
>   docroot <- xmlRoot(doc)
>   pgon <-    

try

    lapply(
       xpathSApply(doc, '//Polygon',
          xpathSApply, '//coordinates', function(node)
              strsplit(xmlValue(node), split=',|\\s+')),
       as.numeric)

which should find all polygon nodes, extract the coordinates node for
each polygon separately, split the coordinates string by comma and
convert to a numeric vector, and then report a list of such vectors, one
vector per polygon.

i've tried it on some dummy data made up from your example below.  the
xpath patterns may need to be adjusted, depending on the actual
structure of your xml file, as may the strsplit pattern.

vQ






> but this is hardly general!
>
> I'm hoping there is some relatively straightforward way to use
> functions from the XML package to recursively descend the structure
> and return the text strings representing the polygons into, say, a
> list with as many elements as there are polygons. I've been looking at
> several XML documentation files downloaded from
> http://www.omegahat.org/RSXML/ , but since my understanding of XML is
> weak at best, I'm having trouble.  I can deal with converting the text
> strings to an R object suitable for plotting etc.
>
>
> Here's a look at the structure of this file
>
> graphics[5]% grep Polygon doc.kml
>         <Polygon id="15342">
>         </Polygon>
>         <Polygon id="1073">
>         </Polygon>
>         <Polygon id="16508">
>         </Polygon>
>         <Polygon id="18665">
>         </Polygon>
>         <Polygon id="32903">
>         </Polygon>
>         <Polygon id="5232">
>         </Polygon>
>
> And each of the <Polygon> </Polygon> pairs has <coordinates> as per
> this example:
>
>
>     <Polygon id="15342">
>         <outerBoundaryIs>
>             <LinearRing id="11467">
>                 <coordinates>
> -23.679835352296,30.263840290388,5.000000000000001
> -23.68138782285701,30.264740875186,5.000000000000001
>    [snip]
> -23.679835352296,30.263840290388,5.000000000000001
> -23.679835352296,30.263840290388,5.000000000000001 </coordinates>
>             </LinearRing>
>         </outerBoundaryIs>
>     </Polygon>
>
>
> Thanks!
> -Don
>
>
> p.s.
> There is a lot of other stuff in this file, i.e, some points, and
> attributes of the points such as color, as well as a legend describing
> what the polygons mean, but I can get by without all that stuff, at
> least for now.
>
> Note also that readOGR() would in principle work, but the underlying
> OGR libraries have some limitations that this file exceeds. Per info
> at http://www.gdal.org/ogr/drv_kml.html.