[R] JRI memory leak?
andzsin
andzsinszan at gmail.com
Thu Jun 18 11:16:14 CEST 2009
Dear List,
R 2.8.0
JRI 0.4-1
OS WinXP Pro
Java 1.6
I am calling R from Java through JRI.
My process runs an iteration endlessly, and (supposedly) cleans up
after each turn :
rm(list=ls(all=TRUE)
gc(reset=TRUE)
In Java:
rengine.eval("rm(list=ls(all=TRUE)); gc(reset=TRUE)");
Still, memory.size() keeps increasing:
iter 820 mem: 13.168 MB
iter 840 mem: 13.362 MB
iter 860 mem: 13.046 MB
iter 880 mem: 13.211 MB
..
iter 15380 mem: 78.125 MB
Btw, there is a nice linear correlation between iterationN and
mem.size:
cor(iter,mem)
[1] 0.9936346
I also checked the number of objects by length(ls()) which was zero
at the end of each iteration.
So rm() is OK, but not so gc().
In RGUI (using same R build) running a dummy iteration with gc()
worked OK (no leaks), so I guess my problem is related to JRI.
Anyone with similar problems?
Perhaps time to upgrade JRI -> rJava ?
Best,
Gabor
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