[R] installing sn package
Uwe Ligges
ligges at statistik.tu-dortmund.de
Mon Jun 1 18:50:06 CEST 2009
Roslina Zakaria wrote:
> Hi r-users,
>
> I want to use the sn package but I got the following message:
>
>> install.packages(repos=NULL,pkgs="c:\\Tinn-R\\sn_0.4-12.zip")
> Warning: package 'sn' is in use and will not be installed
> updating HTML package descriptions
>
> I did tried to do it a few times but it gives the same message.
Well sn is loaded. Try to start R without loading "sn" at startup and
install again.
Uwe Ligges
>
>
>
> ________________________________
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> 1. Intra-observer reliability (Shreyasee)
> 2. Re: Constrained fits: y~a+b*x-c*x^2, with a,b,c >=0
> (Berwin A Turlach)
> 3. Multiple ANOVA tests (Imri)
> 4.. r-plot (durden10)
> 5. Multivariate Transformations (Hollix)
> 6. Re: Neural Network resource (Tony Breyal)
> 7. How to write a loop? (Maithili Shiva)
> 8. How to exclude a column by name? (Zeljko Vrba)
> 9. Re: How to write a loop? (Linlin Yan)
> 10. Re: How to exclude a column by name? (Linlin Yan)
> 11. Re: How to exclude a column by name? (Paul Hiemstra)
> 12. Re: How to exclude a column by name? (Zeljko Vrba)
> 13. Re: How to exclude a column by name? (Peter Dalgaard)
> 14. Re: Multiple ANOVA tests (Mike Lawrence)
> 15. Re: r-plot (Gavin Simpson)
> 16. Re: Intra-observer reliability (Gavin Simpson)
> 17. Re: Intra-observer reliability (Jim Lemon)
> 18. file.move? (Stefan Uhmann)
> 19. Re: Intra-observer reliability (Shreyasee)
> 20. Re: Intra-observer reliability (Shreyasee)
> 21. Re: Constrained fits: y~a+b*x-c*x^2, with a,b,c >=0 (Liaw, Andy)
> 22. Re: How to exclude a column by name? (Henrique Dallazuanna)
> 23. Re: r-plot (Richard.Cotton at hsl.gov.uk)
> 24. Re: Harmonic Analysis (Uwe Ligges)
> 25. Problem with adding labels in ggplot2 (Zeljko Vrba)
> 26. Full likelihood from survreg (Ullrika Sahlin)
> 27. Re: Multiple ANOVA tests (Imri)
> 28. Re: Problem with adding labels in ggplot2 (Zeljko Vrba)
> 29. Re: split strings (Monica Pisica)
> 30. Re: Multivariate Transformations (stephen sefick)
> 31. Sort matrix by column 1 ascending then by column 2 decending
> (Paul Geeleher)
> 32. Re: moving from Windows to Linux - need help (Millo Giovanni)
> 33. Warning message as a result of logistic regression performed
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> 34. Re: C4.5 implementation in R (Lazy Tiger)
> 35. Re: Multiple ANOVA tests (Mike Lawrence)
> 36. Re: r-plot (Jim Lemon)
> 37. Re: Harmonic Analysis (stephen sefick)
> 38. Re: Sort matrix by column 1 ascending then by column 2
> decending (Henrique Dallazuanna)
> 39. Hierarchical glm with binomial family (Johan Stenberg)
> 40. Re: optim() question (John C Nash)
> 41. Re: Harmonic Analysis (Gerard M. Keogh)
> 42. Re: How to write a loop? (Andrew Dolman)
> 43. Re: file.move? (Prof Brian Ripley)
> 44. Re: Sort matrix by column 1 ascending then by column 2
> decending (Paul Geeleher)
> 45. Defining functions - an interesting problem (utkarshsinghal)
> 46. Re: Hierarchical glm with binomial family (Ben Bolker)
> 47. Re: Warning message as a result of logistic regression
> performed (Gavin Simpson)
> 48. Re: Multivariate Transformations (Gavin Simpson)
> 49. Re: How to exclude a column by name? (Stavros Macrakis)
> 50. Re: Neural Network resource (Indrajit Sengupta)
> 51. Re: Defining functions - an interesting problem (Thomas Lumley)
> 52. Re: Defining functions - an interesting problem (Gavin Simpson)
> 53. Re: Defining functions - an interesting problem (utkarshsinghal)
> 54. R in Ubunto (R Heberto Ghezzo, Dr)
> 55. vegan metaMDS question (stephen sefick)
> 56. Re: Neural Network resource (Max Kuhn)
> 57. Re: How to exclude a column by name? (Dieter Menne)
> 58. Re: R in Ubunto (stephen sefick)
> 59. Re: Defining functions - an interesting problem (Stavros Macrakis)
> 60. Re: R in Ubunto (Jeff Newmiller)
> 61. Object-oriented programming in R (Luc Villandre)
> 62. Changing point color/character in qqmath (Kevin W)
> 63. Re: Hierarchical glm with binomial family (Douglas Bates)
> 64. Re: Sort matrix by column 1 ascending then by column 2
> decending (Linlin Yan)
> 65. Deviance explined in GAMM, library mgcv (Berta Ib??ez)
> 66. How to set a filter during reading tables (guox at ucalgary.ca)
> 67. Re: How to exclude a column by name? (Wacek Kusnierczyk)
> 68. Labeling barplot bars by multiple factors (Thomas Levine)
> 69. Re: vegan metaMDS question (Gavin Simpson)
> 70. Re: Sort matrix by column 1 ascending then by column 2
> decending (Kevin W)
> 71. Re: R in Ubunto (Jarek Jasiewicz)
> 72. Re: Sort matrix by column 1 ascending then by column 2
> decending (Duncan Murdoch)
> 73. Re: Labeling barplot bars by multiple factors (Mike Lawrence)
> 74. alternative to built-in data editor (Jose Quesada)
> 75. no internal function "int.unzip" in R 2.9.0 for Windows
> (Carson, John)
> 76. "Error: package/namespace load failed" (Rebecca Sela)
> 77. contour lines on persp plot (Jack Siegrist)
> 78. Re: Neural Network resource (Indrajit Sengupta)
> 79. Re: alternative to built-in data editor (Peter Dalgaard)
> 80. r-plot 2nd attempt (durden10)
> 81. R-beta: Re:Stats Seminar 18/02/98 (Roland Chariatte)
> 82. problem with cbind (kayj)
> 83. interpretation of the likelihood ratio test under *R* GLM
> (Michael Menke)
> 84. how do I get to be a member? (Michael Menke)
> 85. RWeka weka.core.SerializationHelper.write (Christian)
> 86. RWeka weka.core.SerializationHelper.write (Christian)
> 87. Re: Loop avoidance and logical subscripts (retama)
> 88. Re: Neural Network resource (Tony Breyal)
> 89. invert axis persp plot (Jack Siegrist)
> 90. a simple trick to get autoclose parenthesis on windows
> (Jose Quesada)
> 91. Re: no internal function "int.unzip" in R 2.9.0 for Windows
> (Romain Francois)
> 92. reduce size of plot inside window and place legend beside
> plot (Wade Wall)
> 93. ggplot2 adding vertical line at a certain date (stephen sefick)
> 94. Re: reduce size of plot inside window and place legend beside
> plot (baptiste auguie)
> 95. Factor level with no cases shows up in a plot (Arthur Burke)
> 96. R Books listing on R-Project (Stavros Macrakis)
> 97. Re: Factor level with no cases shows up in a plot
> (krzysztof.sakrejda at gmail.com)
> 98. Re: Still can't find missing data (Farley, Robert)
> 99. Re: "Error: package/namespace load failed" (Martin Morgan)
> 100. Re: alternative to built-in data editor (Greg Snow)
> 101. Re: R Books listing on R-Project (G. Jay Kerns)
> 102. Axis label spanning multiple plots (Andre Nathan)
> 103. Re: how do I get to be a member? ( (Ted Harding))
> 104. Re: r-plot 2nd attempt (Gavin Simpson)
> 105. Re: Axis label spanning multiple plots (Greg Snow)
> 106. Re: how do I get to be a member? (Gavin Simpson)
> 107. Re: Factor level with no cases shows up in a plot (Stefan Grosse)
> 108. R: Harmonic Analysis (mauede at alice.it)
> 109. Re: Changing point color/character in qqmath (Kevin W)
> 110. Re: Linear Regression with Constraints (Emmanuel Charpentier)
> 111. boxplot (amorigandhi at yahoo.de)
> 112. Re: R: Harmonic Analysis (stephen sefick)
> 113. Re: boxplot (stephen sefick)
> 114. lattice::xyplot axis padding with fontfamily="mono"
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> 115. How do I get removed from this mailing list? (Andrey Lyalko)
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> 118. Replace is leaking? (Zhou Fang)
> 119. question about using a remote system (Erin Hodgess)
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> 122. Re: problem with cbind (jim holtman)
> 123. Re: problem with cbind (Gabor Grothendieck)
> 124. Re: R Books listing on R-Project (Ben Bolker)
> 125. R help (mohsin ali)
> 126. R: R: Harmonic Analysis (mauede at alice.it)
> 127. Interaction plots as lines or bars? (Michael Kubovy)
> 128. PBSmapping problems with importGSHHS (Tim Clark)
> 129. Re: R Books listing on R-Project (G. Jay Kerns)
> 130. Unable to load R (anupam sinha)
> 131. Re: Unable to load R (Zeljko Vrba)
> 132. Re: Interaction plots as lines or bars? (Dieter Menne)
> 133. Re: question about using a remote system ( (Ted Harding))
> 134. Re: alternative to built-in data editor (Dieter Menne)
> 135. Re: question about using a remote system (Mark Wardle)
> 136. Re: How do I get removed from this mailing list? (Peter Dalgaard)
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> 138. Re: Object-oriented programming in R (Mark Wardle)
> 139. Re: How do I get removed from this mailing list? (Peter Dalgaard)
> 140. Re: How do I get removed from this mailing list?
> (Wacek Kusnierczyk)
> 141. Re: ggplot2 adding vertical line at a certain date (Ivan Alves)
> 142. optima in unimode (ms.com)
> 143. Re: "1L" and "0L" (Gavin Simpson)
> 144. Re: How do I get removed from this mailing list? (Gavin Simpson)
> 145. Re: optima in unimode (Gavin Simpson)
> 146. Re: Unable to load R (anupam sinha)
> 147. Re: Unable to load R (Zeljko Vrba)
> 148. Re: R help (Richard.Cotton at hsl.gov.uk)
> 149. Delta Kronecker (FMH)
>
>
> ----------------------------------------------------------------------
>
> Message: 1
> Date: Wed, 27 May 2009 18:08:07 +0800
> From: Shreyasee <shreyasee.pradhan at gmail.com>
> Subject: [R] Intra-observer reliability
> To: r-help at r-project.org
> Message-ID:
> <dd01e5960905270308j7b58a459ua6187eca6f0ba921 at mail.gmail.com>
> Content-Type: text/plain
>
> Hi,
>
> I searched a lot on the internet but was unable to find the function for
> calculating the kappa statistics for intra-observer reliabilty.
> Can anybody help me in the this regards.
>
> Thanks,
> Shreyasee
>
> [[alternative HTML version deleted]]
>
>
>
> ------------------------------
>
> Message: 2
> Date: Wed, 27 May 2009 18:09:27 +0800
> From: Berwin A Turlach <berwin at maths.uwa.edu.au>
> Subject: Re: [R] Constrained fits: y~a+b*x-c*x^2, with a,b,c >=0
> To: amvds at xs4all.nl
> Cc: r-help at r-project.org
> Message-ID: <20090527180927.1814b009 at berwin-nus1>
> Content-Type: text/plain; charset=US-ASCII
>
> G'day Alex,
>
> On Wed, 27 May 2009 11:51:39 +0200
> Alex van der Spek <amvds at xs4all.nl> wrote:
>
>> I wonder whether R has methods for constrained fitting of linear
>> models.
>>
>> I am trying fm<-lm(y~x+I(x^2), data=dat) which most of the time gives
>> indeed the coefficients of an inverted parabola. I know in advance
>> that it has to be an inverted parabola with the maximum constrained to
>> positive (or zero) values of x.
>>
>> The help pages for lm do not contain any info on constrained fitting.
>>
>> Does anyone know how to?
>
> Look at the package nnls on CRAN.
>
> According to your subject line, you are trying to solve what is known
> as a quadratic program, and there are at least two quadratic
> programming solvers (ipop in kernlab and solve.qp in quadprog)
> available for R.
>
> HTH.
>
> Cheers,
>
> Berwin
>
> =========================== Full address =============================
> Berwin A Turlach Tel.: +65 6516 4416 (secr)
> Dept of Statistics and Applied Probability +65 6516 6650 (self)
> Faculty of Science FAX : +65 6872 3919
> National University of Singapore
> 6 Science Drive 2, Blk S16, Level 7 e-mail: statba at nus.edu.sg
> Singapore 117546 http://www.stat.nus.edu.sg/~statba
>
>
>
> ------------------------------
>
> Message: 3
> Date: Wed, 27 May 2009 03:11:08 -0700 (PDT)
> From: Imri <bisrael at agri.huji.ac.il>
> Subject: [R] Multiple ANOVA tests
> To: r-help at r-project.org
> Message-ID: <23739615.post at talk.nabble.com>
> Content-Type: text/plain; charset=UTF-8
>
>
> Hi all -
> I'm trying to do multiple one-way ANOVA tests of different factors on the
> same variable. As a result I have a list with all the ANOVA tables, for
> exemple:
>
> $X11_20502
> Analysis of Variance Table
>
> Response: MPH
> Df Sum Sq Mean Sq F value Pr(>F)
> x 3 369.9 123.3 6.475 0.0002547 ***
> Residuals 635 12093.2 19.0
> ---
> Signif. codes: 0 ?***? 0.001 ?**? 0..01 ?*? 0.05 ?.? 0.1 ? ? 1
>
> $X11_21067
> Analysis of Variance Table
>
> Response: MPH
> Df Sum Sq Mean Sq F value Pr(>F)
> x 1 26.7 26.7 1.3662 0.2429
> Residuals 637 12436.4 19.5
>
> $X11_10419
> Analysis of Variance Table
>
> Response: MPH
> Df Sum Sq Mean Sq F value Pr(>F)
> x 3 527.8 175.9 9.361 4.621e-06 ***
> Residuals 635 11935.3 18.8
> ---
> Signif. codes: 0 ?***? 0.001 ?**? 0.01 ?*? 0.05 ?.? 0.1 ? ? 1
>
> My question is how can I extract from this list, just the Pr(>F) values for
> each x ?
>
>
> ------------------------------------------------------------------------
>
> This body part will be downloaded on demand.
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