[R] hi friends, is there any wait function in R

ONKELINX, Thierry Thierry.ONKELINX at inbo.be
Tue Jul 14 13:34:24 CEST 2009


Dear Deepak,

You'll need to clarify what EXACTLY is happening? If empty plots are
created then try to wrap the plot() in print() statements.
print(plot(...)).

Furthermore I would recommend to avoid attach.

HTH,

Thierry



------------------------------------------------------------------------
----
ir. Thierry Onkelinx
Instituut voor natuur- en bosonderzoek / Research Institute for Nature
and Forest
Cel biometrie, methodologie en kwaliteitszorg / Section biometrics,
methodology and quality assurance
Gaverstraat 4
9500 Geraardsbergen
Belgium
tel. + 32 54/436 185
Thierry.Onkelinx at inbo.be
www.inbo.be

To call in the statistician after the experiment is done may be no more
than asking him to perform a post-mortem examination: he may be able to
say what the experiment died of.
~ Sir Ronald Aylmer Fisher

The plural of anecdote is not data.
~ Roger Brinner

The combination of some data and an aching desire for an answer does not
ensure that a reasonable answer can be extracted from a given body of
data.
~ John Tukey

-----Oorspronkelijk bericht-----
Van: r-help-bounces at r-project.org [mailto:r-help-bounces at r-project.org]
Namens deepak m r
Verzonden: dinsdag 14 juli 2009 13:17
Aan: r-help at r-project.org
Onderwerp: [R] hi friends, is there any wait function in R

hi,
   is there any wait function in R. I am running one R script to plot
many graphs it is in the for loop. its showing no error but its not
plotting well I think i can solve this problem with a wait function.
Please help me in this regards. If u need any clarification about
programme. u can find the script below.

best regards,
Deepak.M.R
Biocomputing Group
University of Bologana.


#!/usr/bin/R
s<-c("GG","GA","GV","GL","GI","GM","GF","GW","GP","GS","GT","GC","GY","G
N","GQ","GD","GE","GK","GR","GH","AA","AV","AL","AI","AM","AF","AW","AP"
,"AS","AT","AC","AY","AN","AQ","AD","AE","AK","AR","AH","VV","VL","VI","
VM","VF","VW","VP","VS","VT","VC","VY","VN","VQ","VD","VE","VK","VR","VH
","LL","LI","LM","LF","LW","LP","LS","LT","LC","LY","LN","LQ","LD","LE",
"LK","LR","LH","II","IM","IF","IW","IP","IS","IT","IC","IY","IN","IQ","I
D","IE","IK","IR","IH","MM","MF","MW","MP","MS","MT","MC","MY","MN","MQ"
,"MD","ME","MK","MR","MH","FF","FW","FP","FS","FT","FC","FY","FN","FQ","
FD","FE","FK","FR","FH","WW","WP","WS","WT","WC","WY","WN","WQ","WD","WE
","WK","WR","WH","PP","PS","PT","PC","PY","PN","PQ","PD","PE","PK","PR",
"PH","SS","ST","SC","SY","SN","SQ","SD","SE","SK","SR","SH","TT","TC","T
Y","TN","TQ","TD","TE","TK","TR","TH","CC","CY","CN","CQ","CD","CE","CK"
,"CR","CH","YY","YN","YQ","YD","YE","YK","YR","YH","NN","NQ","ND","NE","
NK","NR","NH","QQ","QD","QE","QK","QR","QH","DD","DE"!
 ,"DK","DR","DH","EE","EK","ER","EH","KK","KR","KH","RR","RH","HH")
for(t in 1:length(s))
	{
	
a<-read.table(paste("../All_alpha_proteins/alp",s[t],"mean.sat",sep=""),
header=T)
	attach (a)
	names(a)
	al<-1:length(paste("alp",s[t],"_mean",sep=""))
	
b<-read.table(paste("../All_beta_proteins/bet",s[t],"mean.sat",sep=""),h
eader=T)
	attach(b)
	names(b)
	bl<-1:length(paste("bet",s[t],"_mean",sep=""))
	
p<-read.table(paste("../Alpha_and_beta_proteins_a+b/apb",s[t],"mean.sat"
,sep=""),header=T)
	attach(p)	
	names(p)
	pl<-1:length(paste("apb",s[t],"_mean",sep=""))
	
o<-read.table(paste("../Alpha_and_beta_proteins_aorb/aob",s[t],"mean.sat
",sep=""),header=T)
	attach(o)	
	names(o)
	ol<-1:length(paste("aob",s[t],"_mean",sep=""))
	postscript(file=paste("Mean_",s[t],"_Plot.ps",sep=""))
	plot(0,xlim=c(0,160),ylim=c(0,70),main=paste("Mean Distance Plot
for ",s[t]," Rsidue pair",sep=""),ylab="Mean Distance in
Angstrom",xlab="Residue Seperation Number")
	lines(al,paste("alp",s[t],"_mean",sep=""),col="blue",lty = 2)
	lines(bl,paste("bet",s[t],"_mean",sep=""),col="yellow",lty = 2)
	lines(pl,paste("apb",s[t],"_mean",sep=""),col="red",lty = 2)
	lines(ol,paste("aob",s[t],"_mean",sep=""),col="green",lty = 2)
	legend("topleft",c("Alpha Proteins","Beta Proteins","Alpha +
Beta","Alpha or Beta"),lty =
c(2,2,2,2),col=c("blue","yellow","red","green"))
	dev.off()
	}

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