[R] odfWeave: odt-file damaged

[ukoenig at med.uni-marburg.de]

Hi,
I think, I can answer my own posting. I found out, that the directory  
structure
of the ODT-file created by "odfWeave" causes the error message.

The file structure of the unzipped odt-file looks like this:

<DIR> Pictures
       content_1-Boxplot.png
content.xml
current.xml
manifest.xml
meta.xml
mimetype
settings.xml
styles.xml
thumbnail.png


But it should look like this:

<DIR> META-INF
       manifest.xml
<DIR> Thumbnails
       thumbnail.png
<DIR> Pictures
       content_1-Boxplot.png
meta.xml
mimetype
settings.xml
styles.xml
content.xml

Now I know. what causes the message "odt file damaged",
but I don´t know a solution. Does anyone do so?

Thanks, Udo




> Dear all,
> I am doing my first steps with odfWeave.
>
> After running the r code (see below), I am trying to open the ODF-document
> with open office, but I am getting the error message:
>
> "The file is damaged, but it can be repaired". If I confirm the question and
> repair the file with open office, I can open it with the desired output,
> which seems to be fine.
>
> My system:
>     R Version 2.9.1
>     Open Office 3.0.1
>     7-Zip 4.65
>     Windows XP
>
> Using zip (http://www.info-zip.org/, zip232xN.zip) had the same result.
>
> What causes the error message?  Is the structure of the ODF document
> as it should be (for the structure please have a look at the bottom of
> this mail)?
>
> I'd greatly appreciate any help.
>
>
> Udo K o e n i g
>
> Clinic for Child and Adolescent Psychiatry
> Philipps University of Marburg, Germany
>
>
> #######################################################################
> #R code
> library(odfWeave)
>
> #odfWeave call
> odfWeave("c:/temp/odfWeave-test.odt", "c:/temp/odfWeave-test-out.odt",
>           control=odfWeaveControl(zipCmd = c("7z a -tzip $$file$$ .",
>           "7z e -tzip $$file$$")))
>
> #######################################################################
> # Contents of my Open office document
>
> <<Initiate, results = hide, echo= FALSE>>=
> #First steps with odfWeave
> attach(iris)
> @
>
> There are \Sexpr{length(iris[, 1])} observations.
>
> <<Table, echo=FALSE, results= xml>>=
> odfTable(iris[1:5,])
> @
>
> <<Table2, echo=FALSE, results= xml>>=
> tab <- round(apply(iris[, 1:4], 2, mean), 2)
> odfTable(tab, horizontal= TRUE)
> @
>
> <<Boxplot, echo=FALSE, fig=TRUE>>=
> boxplot(Sepal.Length~Species)
> @
>
> #######################################################################
> #Log
>
>> odfWeave("c:/temp/odfWeave-test.odt", "c:/temp/odfWeave-test-out.odt",
> +          control=odfWeaveControl(zipCmd = c("7z a -tzip $$file$$ .",
> +          "7z e -tzip $$file$$")))
>    Copying  c:/temp/odfWeave-test.odt
>    Setting wd to
> C:\DOCUME~1\Udo_2\LOCALS~1\Temp\Rtmp6QrXgk/odfWeave05190748330
>    Unzipping ODF file using 7z e -tzip "odfWeave-test.odt"
>
> 7-Zip 4.65  Copyright (c) 1999-2009 Igor Pavlov  2009-02-03
>
> Processing archive: odfWeave-test.odt
>
> Extracting  mimetype
> Extracting  Configurations2\statusbar
> Extracting  Configurations2\accelerator\current.xml
> Extracting  Configurations2\floater
> Extracting  Configurations2\popupmenu
> Extracting  Configurations2\progressbar
> Extracting  Configurations2\menubar
> Extracting  Configurations2\toolbar
> Extracting  Configurations2\images\Bitmaps
> Extracting  content.xml
> Extracting  styles.xml
> Extracting  meta.xml
> Extracting  Thumbnails\thumbnail.png
> Extracting  settings.xml
> Extracting  META-INF\manifest.xml
>
> Everything is Ok
>
> Folders: 7
> Files: 8
> Size:       28518
> Compressed: 8768
>
>    Removing  odfWeave-test.odt
>    Creating a Pictures directory
>
>    Pre-processing the contents
>    Sweaving  content.Rnw
>
>    Writing to file content_1.xml
>    Processing code chunks ...
>      1 : term hide(label=Initiate)
>      2 : term xml(label=Table)
>      3 : term xml(label=Table2)
>      4 : term verbatim(label=Boxplot)
>
>    'content_1.xml' has been Sweaved
>
>    Removing content.xml
>
>    Post-processing the contents
>    Removing content.Rnw
>    Removing styles.xml
>    Renaming styles_2.xml to styles.xml
>    Removing extra files
>
>    Packaging file using 7z a -tzip "odfWeave-test.odt" .
>
> 7-Zip 4.65  Copyright (c) 1999-2009 Igor Pavlov  2009-02-03
> Scanning
>
> Creating archive odfWeave-test.odt
>
> Compressing  content.xml
> Compressing  current.xml
> Compressing  manifest.xml
> Compressing  meta.xml
> Compressing  mimetype
> Compressing  Pictures\content_1-Boxplot.png
> Compressing  settings.xml
> Compressing  styles.xml
> Compressing  thumbnail.png
>
> Everything is Ok
>    Copying  odfWeave-test.odt
>    Resetting wd
>    Removing  C:\DOCUME~1\Udo_2\LOCALS~1\Temp\Rtmp6QrXgk/odfWeave05190748330
>
>    Done
>
> #######################################################################
> #Structure of the unzipped odf-document that produced the error message
>
> 05.07.2009  11:43    <DIR>          Bitmaps
> 05.07.2009  19:07            13.820 content.xml
> 05.07.2009  11:43                 0 current.xml
> 05.07.2009  11:43    <DIR>          floater
> 05.07.2009  11:43             1.889 manifest.xml
> 05.07.2009  11:43    <DIR>          menubar
> 05.07.2009  11:43               968 meta.xml
> 05.07.2009  11:43                39 mimetype
> 05.07.2009  22:18    <DIR>          Pictures
> 05.07.2009  11:43    <DIR>          popupmenu
> 05.07.2009  11:43    <DIR>          progressbar
> 05.07.2009  11:43             7.993 settings.xml
> 05.07.2009  11:43    <DIR>          statusbar
> 05.07.2009  19:07            13.281 styles.xml
> 05.07.2009  11:43             1.579 thumbnail.png
> 05.07.2009  11:43    <DIR>          toolbar
>
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