[R] Running R under Sun Grid Engine with OpenMPI tight integration

[Marce]

2009/1/27 Rainer M Krug <r.m.krug at gmail.com>:
> On Tue, Jan 27, 2009 at 2:30 AM, Peter Waltman <peter.waltman at gmail.com> wrote:
>> Hi -
>>
>> I saw your posting on the R-help mailing list.  Were you ever able to get
>> this working?  did you end up switching to use the rsge library?
>
> Yes - that is exactly what I did - I am using rsge or, which is in
> most cases sufficient for me, starting several instances of R and run
> the whole simulation (array processing).
>
> But I would still like to know how I can use the Rmpi and snow on the
> Sun Grid Engine.
>
> Please keep me posted,
>
> Rainer
>>
>> I'm trying to do the same, and not having very much luck getting it going.
>>
>> Thanks!
>>
>> Peter Waltman
>>
>
>
>
> --
> Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation
> Biology, UCT), Dipl. Phys. (Germany)
>
> Centre of Excellence for Invasion Biology
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Hi all,
I have been installed R in SGE but with LAM tight integration, I don't
k now if this help you :s . The problem I had with OpenMPI was that
the load in all nodes waiting for a job and with an instance of R.
Their load up to 100 %, and there isn't a job running on them.
Even so, I will try to configure it with OpenMPI..when I have results
I will post them ok?

Saludos