[R] Value Lookup from File without Slurping
Gundala Viswanath
gundalav at gmail.com
Fri Jan 16 10:02:10 CET 2009
Dear all,
I have a repository file (let's call it repo.txt)
that contain two columns like this:
# tag value
AAA 0.2
AAT 0.3
AAC 0.02
AAG 0.02
ATA 0.3
ATT 0.7
Given another query vector
> qr <- c("AAC", "ATT")
I would like to find the corresponding value for each query above,
yielding:
0.02
0.7
However, I want to avoid slurping whole repo.txt into an object (e.g. hash).
Is there any ways to do that?
The reason I want to do that because repo.txt is very2 large size
(milions of lines,
with tag length > 30 bp), and my PC memory is too small to keep it.
- Gundala Viswanath
Jakarta - Indonesia
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