[R] How to create a chromosome location map by locus ID
Pablo G Goicoechea
pgoikoetxea at neiker.net
Thu Jan 15 13:29:03 CET 2009
Sorry list, I guess I sent an html reply.
Hi Sake:
If you do not find an answer within the list, MapChart will probably do
what you want (without the fancy chromosomal bands, though). You can
find it at
http://www.biometris.wur.nl/uk/Software/MapChart/
Hope this helps
Sake escribió:
> Hi,
>
> I'm trying to make a chromosomal map in R by using the locus. I have a list
> of genes and their locus, and I want to visualise that so you can see if
> there are multiple genes on a specific place on a chromosome. A example of
> what I more or less want is below:
> http://www.nabble.com/file/p21474206/untitled.JPG untitled.JPG
> The genes and locus are here:
> http://www.nabble.com/file/p21474206/genlocus.csv genlocus.csv
> I've tried some things, but nothing worked like I would like it to see.
> Maybe there is some kind of package that does this for you, but I did not
> find it yet.
> Thanx
>
> Sake
>
--
*Pablo G Goicoechea*
Bioteknología Saila / /Dpto Biotecnología/
NEIKER-Tecnalia
Apdo 46
01080 Vitoria-Gasteiz (SPAIN)
Phone: +34 902 540 546 Fax: +34 902 540 547
pgoikoetxea at neiker.net <mailto:pgoikoetxea at neiker.net>
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