[R] Fwd: Error with hgu133a2.db

[Martin Morgan]

Hi Christoph --

ask questions about Bioconductor packages on the Bioconductor mailing
list (provide the output of sessionInfo(), as some of the error message
below suggests a seriously out-of-date installation).

http://bioconductor.org/docs/mailList.html

Here the likely problem is that some of your other packages require
updating, as outlined (several topics down) at

http://bioconductor.org/docs/install/

Martin

mkna005 mkna005 wrote:
> Hi,
> I'm trying to get this library working under R2.10.0. I downloaded it
> and installed it from zip file. i get the following output.
> 
>> library(hgu133a2.db)
> Error in library(hgu133a2.db) : there is no package called 'hgu133a2.db'
>> utils:::menuInstallLocal()
> package 'hgu133a2.db' successfully unpacked and MD5 sums checked
>> library(hgu133a2.db)
> Loading required package: AnnotationDbi
> Loading required package: Biobase
> 
> Welcome to Bioconductor
> 
>  Vignettes contain introductory material. To view, type
>  'openVignette()'. To cite Bioconductor, see
>  'citation("Biobase")' and for packages 'citation(pkgname)'.
> 
> Loading required package: DBI
> Error in fun(...) : could not find function "createAnnObjs.HUMANCHIP_DB"
> In addition: Warning message:
> package 'hgu133a2.db' was built under R version 2.7.0 and help will
> not work correctly
> Please re-install it
> Error : .onLoad failed in 'loadNamespace' for 'hgu133a2.db'
> Error: package/namespace load failed for 'hgu133a2.db'
> 
> Whats the problem and how can I fix it?
> 
> Thanks
> 
> Christoph
> 
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-- 
Martin Morgan
Computational Biology / Fred Hutchinson Cancer Research Center
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