[R] How to resolve include Rcpp.h problems?
Amine Jallouli
jallouli.med.amine at gmail.com
Sun Dec 13 09:56:48 CET 2009
Hi,
I am Linux Ubuntu 9.04 user. I'm using R-2.6.
Actually, I am developing R package for reading/writing 3D images. I needed
to use the R package Rcpp in order to make profit of available C/C++ codes.
My problem is that my C code is not able to include the Rcpp.h
In fact, when I run this command R CMD build rply, I got the following error
message in the file /home/amine/R/r-eclipse/rply.Rcheck/00install.out:
* Installing *source* package 'rply' ...
** libs
gcc -std=gnu99 -I/usr/share/R/include -fpic -g -O2 -c Call_interface.c
-o Call_interface.o
gcc -std=gnu99 -I/usr/share/R/include -fpic -g -O2 -c C_interface.c -o
C_interface.o
gcc -std=gnu99 -I/usr/share/R/include -fpic -g -O2 -c fifrt.c -o
fifrt.o
g++ -I/usr/share/R/include -fpic -g -O2 -c RCPP_test.cpp -o
RCPP_test.o
RCPP_test.cpp:1:18: erreur: Rcpp.h : No such file or directory
RCPP_test.cpp: In function ‘SEXPREC* readRIntVec(SEXPREC*)’:
RCPP_test.cpp:14: erreur: ‘RcppVector’ was not declared in this scope
RCPP_test.cpp:14: erreur: expected primary-expression before ‘int’
RCPP_test.cpp:14: erreur: expected `;' before ‘int’
make: *** [RCPP_test.o] Erreur 1
ERROR: compilation failed for package 'rply'
** Removing '/home/amine/R/r-eclipse/rply.Rcheck/rply'
It is evident that I will this error since the file Rcpp.h is not in this
directory /usr/share/R/include .
I tried to solve this include problem by copying the Rcpp.h to
/usr/share/R/include. But, it was not successful and I the following error
message.
Error in dyn.load(file, DLLpath = DLLpath, ...) :
Unable to load shared library
'/home/amine/R/r-eclipse/rply.Rcheck/rply/libs/rply.so':
/home/amine/R/r-eclipse/rply.Rcheck/rply/libs/rply.so: undefined symbol:
_ZN10RcppVectorIiEC1EP7SEXPREC
Error in library(rply) : .First.lib has failed for 'rply'
Execution stopped
It looks like this package has a loading problem: see the messages for
details.
Resulting this last error seems to be also logical. In fact, I think the
file libRcpp.so is need for the compilation of my code.
Please notice that the package Rcpp is installed in the following directory:
/usr/lib/R/site-library/Rcpp
Thank you for giving an idea for solving this problem.
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