[R] read.affy.mixed - subscript out of bounds error
Zuzanna
zuzanna.makowska at unibas.ch
Tue Dec 8 09:08:49 CET 2009
Hello,
I have a problem with read.affy.mixed function. I want to read in
together a set of CEL files from chip types Affymettrix HGU133A_2 and
HGU133_Plus_2. I have my files to be read in in one directory together
with a white space delimited file describing them (covdesc). In this
directory I give a command:
> merge <- read.affy.mixed()
Error in merged[[i]] : subscript out of bounds
Error in cdfName(merged[[i]]) :
error in evaluating the argument 'object' in selecting a method for
function 'cdfName'
> sessionInfo()
R version 2.10.0 (2009-10-26)
x86_64-apple-darwin9.8.0
locale:
[1] en_US.UTF-8/en_US.UTF-8/C/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] hgu133a2.db_2.3.5 hgu133plus2probe_2.5.0
hgu133plus2.db_2.3.5 org.Hs.eg.db_2.3.6
[5] RSQLite_0.7-3 DBI_0.2-4
hgu133a2probe_2.5.0 AnnotationDbi_1.8.1
[9] hgu133a2cdf_2.5.0 hgu133plus2cdf_2.5.0
simpleaffy_2.22.0 gcrma_2.18.0
[13] genefilter_1.28.2 affy_1.24.2 Biobase_2.6.0
loaded via a namespace (and not attached):
[1] affyio_1.14.0 annotate_1.24.0 Biostrings_2.14.8
IRanges_1.4.9
[5] preprocessCore_1.8.0 splines_2.10.0 survival_2.35-7
tools_2.10.0
[9] xtable_1.5-6
Thanks for your help!
Zuza
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