[R] Out of memory issue
Neotropical bat risk assessments
neotropical.bats at gmail.com
Sat Apr 25 03:06:36 CEST 2009
Hi all,
Julian just reminded me I need to include the lines of code so here it is
below.
I am trying to run some plots on data, but when loading the CSV data file it
doss that but in ggplot R is stopping and I am getting an out of memory
error.
>
> d <- read.csv batcalls.rda
Error: unexpected symbol in "d <- read.csv batcalls.rda"
> attach(d)
Error in attach(d) : object "d" not found
> library(ggplot2)
> print(qplot(Sc, Fc))
Error in eval(expr, envir, enclos) : object "Sc" not found
> data(batcalls)
> attach(batcalls)
> print(qplot(Fc,geom="density"))
> b<-kmeans(Fc,c(10,15,18,30))
> print(qplot(Sc,Fc,colour=as.factor(b$cluster)))
>
> print(qplot(Dur,geom="density"))
> b<-kmeans(Dur,c(10,15,18,30))
> print(qplot(Dur,Fc,colour=as.factor(b$cluster)))
> d <- read.csv ("C:/Rainey/RainyAllbats.csv")
> attach(d)
The following object(s) are masked from batcalls :
Dc Dur Fc Fk Fmax Fmean Fmin Qk Qual S1 Sc st TBC Tc Tk
> library(ggplot2)
> print(qplot(Sc, Fc))
Warning messages:
1: In data.frame(..., check.names = FALSE) :
Reached total allocation of 1535Mb: see help(memory.size)
2: In data.frame(..., check.names = FALSE) :
Reached total allocation of 1535Mb: see help(memory.size)
3: Removed 1200249 rows containing missing values (geom_point).
> data(d)
Warning message:
In data(d) : data set 'd' not found
> attach(d)
The following object(s) are masked from d ( position 3 ) :
Dc Dur Fc Filename Fk Fmax Fmean Fmin Qk Qual S1 Sc st TBC Tc Tk
The following object(s) are masked from batcalls :
Dc Dur Fc Fk Fmax Fmean Fmin Qk Qual S1 Sc st TBC Tc Tk
> print(qplot(Fc,geom="density"))
There were 15 warnings (use warnings() to see them)
> b<-kmeans(Fc,c(10,15,18,30))
Error in switch(nmeth, { : NA/NaN/Inf in foreign function call (arg 1)
> f=jpeg(file="Sc x Fc.jpg")
> print(qplot(Sc,Fc,colour=as.factor(b$cluster)))
Error in data.frame(colour = c(3L, 4L, 4L, 4L, 4L, 1L, 4L, 2L, 1L, 1L, :
arguments imply differing number of rows: 9404, 2400489
> dev.off()
Anyway to tweak this somehow to get it to run?
Using WinXP with 4 GB RAM
Tnx
Bruce
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