[R] DNAcopy package in R

[Ramon Diaz-Uriarte]

Dear Selena,

You probably will want to try to run this in a computing cluster,
parallelizing over samples.

Best,

R.

On Tue, Apr 21, 2009 at 5:40 PM, Selena Niu <yue.niu at yale.edu> wrote:
>
> Hi All:
>
> Has anyone analyzed Illumina 550K data using DNAcopy package? I have around
> 2300 samples. According to
> Venkatraman and Olshen 2007 paper, it needs about 25 min to run a single
> sample for Affymetrix 100K. I am afraid it will take too long to analyzed my
> data. Anybody has an idea? Thanks!
>
> Best,
> --
> View this message in context: http://www.nabble.com/DNAcopy-package-in-R-tp23158907p23158907.html
> Sent from the R help mailing list archive at Nabble.com.
>
> ______________________________________________
> R-help at r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.
>



-- 
Ramon Diaz-Uriarte
Statistical Computing Team
Structural Biology and Biocomputing Programme
Spanish National Cancer Centre (CNIO)
http://ligarto.org/rdiaz
Phone: +34-91-732-8000 ext. 3019