[R] rimage don't install on mac OS X 10.5.5
Prof Brian Ripley
ripley at stats.ox.ac.uk
Fri Oct 31 10:10:38 CET 2008
On Fri, 31 Oct 2008, Florencio Gonzalez Blazquez wrote:
> Hello, i'm trying to install de rimage package form source. I have installed
> fftw2.1.5 and libjpeg, but during compilation appear this message:
Where did you install the fftw headers? If in /usr/local/include, this is
apparently not in the C_INCLUDE_PATH for your system. (The reason that
configure finds ffw.h but the compile does not is most likely that
-isysroot has been set in the compile: the author of rimage has not
been careful to use the same compiler flags as R uses. Cc:ing the author
here -- please study 'Writing R Extensions' about how to use a configure
script in a package.) I suspect the workaround is to set
C_INCLUDE_PATH=/usr/local/include (or as appropriate) in the environment
used for the compile, or to install ffw with --prefix=/usr.
There is a list, R-sig-mac, for MacOS-specific questions and you will get
the ears of the MacOS experts there.
Please note the advice of the posting guide to update your R *before
posting*: R 2.7.0 is rather old and many bugs have been fixed since.
>
> * Installing *source* package 'rimage' ...
> checking for g++... g++
> checking for C++ compiler default output... a.out
> checking whether the C++ compiler works... yes
> checking whether we are cross compiling... no
> checking for suffix of executables...
> checking for suffix of object files... o
> checking whether we are using the GNU C++ compiler... yes
> checking whether g++ accepts -g... yes
> checking for gcc... gcc
> checking whether we are using the GNU C compiler... yes
> checking whether gcc accepts -g... yes
> checking for gcc option to accept ANSI C... none needed
> checking how to run the C preprocessor... gcc -E
> checking for egrep... grep -E
> checking for ANSI C header files... yes
> checking for sys/types.h... yes
> checking for sys/stat.h... yes
> checking for stdlib.h... yes
> checking for string.h... yes
> checking for memory.h... yes
> checking for strings.h... yes
> checking for inttypes.h... yes
> checking for stdint.h... yes
> checking for unistd.h... yes
> checking fftw.h usability... yes
> checking fftw.h presence... yes
> checking for fftw.h... yes
> checking jpeglib.h usability... yes
> checking jpeglib.h presence... yes
> checking for jpeglib.h... yes
> checking for inline... inline
> checking for stdlib.h... (cached) yes
> checking for GNU libc compatible malloc... yes
> configure: creating ./config.status
> config.status: creating src/Makevars
> ** libs
> ** arch - i386
> g++ -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk
> -mmacosx-version-min=10.4 -I/Library/Frameworks/R.framework/Resources/include
> -I/Library/Frameworks/R.framework/Resources/include/i386 -g -O2 -msse3
> -fPIC -g -O2 -march=nocona -c equalize.cpp -o equalize.o
> gcc -arch i386 -isysroot /Developer/SDKs/MacOSX10.4u.sdk
> -mmacosx-version-min=10.4 -std=gnu99
> -I/Library/Frameworks/R.framework/Resources/include
> -I/Library/Frameworks/R.framework/Resources/include/i386 -g -O2 -msse3
> -fPIC -g -O2 -march=nocona -c fftw_access_func.c -o fftw_access_func.o
> fftw_access_func.c:10:18: error: fftw.h: No such file or directory
> fftw_access_func.c: In function ‘fftw_access_func’:
> fftw_access_func.c:20: error: ‘fftwnd_plan’ undeclared (first use in this
> function)
> fftw_access_func.c:20: error: (Each undeclared identifier is reported only
> once
> fftw_access_func.c:20: error: for each function it appears in.)
> fftw_access_func.c:20: error: syntax error before ‘plan’
> fftw_access_func.c:21: error: ‘fftw_complex’ undeclared (first use in this
> function)
> fftw_access_func.c:21: error: ‘i’ undeclared (first use in this function)
> fftw_access_func.c:21: error: ‘s’ undeclared (first use in this function)
> fftw_access_func.c:32: error: syntax error before ‘)’ token
> fftw_access_func.c:33: error: syntax error before ‘)’ token
> fftw_access_func.c:39: error: ‘fftw_real’ undeclared (first use in this
> function)
> fftw_access_func.c:39: error: syntax error before ‘img’
> fftw_access_func.c:40: error: syntax error before ‘img’
> fftw_access_func.c:43: error: ‘plan’ undeclared (first use in this function)
> fftw_access_func.c:43: warning: implicit declaration of function
> ‘fftw2d_create_plan’
> fftw_access_func.c:43: error: ‘FFTW_ESTIMATE’ undeclared (first use in this
> function)
> fftw_access_func.c:45: warning: implicit declaration of function ‘fftwnd_one’
> fftw_access_func.c:46: warning: implicit declaration of function
> ‘fftwnd_destroy_plan’
> make: *** [fftw_access_func.o] Error 1
> chmod: /Library/Frameworks/R.framework/Resources/library/rimage/libs/i386/*:
> No such file or directory
> ** Removing '/Library/Frameworks/R.framework/Resources/library/rimage'
>
> The downloaded packages are in
> /private/var/folders/qX/qXlI7THDG4OBxM62gqgvk++++TI/-Tmp-/Rtmpr3rr50/downloaded_packages
> ERROR: compilation failed for package 'rimage'
>
> I'm using R 2.7.0 in a macBook Pro 2.5 GHz Intel Core Duo with Mac OS X
> version 10.5.5
> I hope somene could explain me what I'm doing wrong
> Thanks in advance.
>
> Florencio González Blázquez
--
Brian D. Ripley, ripley at stats.ox.ac.uk
Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/
University of Oxford, Tel: +44 1865 272861 (self)
1 South Parks Road, +44 1865 272866 (PA)
Oxford OX1 3TG, UK Fax: +44 1865 272595
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