[R] odfWeave error

[Duncan Murdoch]

On 10/23/2008 3:32 PM, Rob James wrote:
> odfWeave is throwing up a cryptic error, after successfully processing a 
> file with a large number of figures (~30) and many \Sexpr{} calls.  The 
> error is (at least to me) cryptic. I am not sure where to look to 
> correct this problem.
> 
> Here's the error:
> 
> 
> Post-processing the contents
> Error in .Call("RS_XML_Parse", file, handlers, endElementHandlers, 
> as.logical(addContext),  :
>   attempt to apply non-function

That's a relatively difficult error to get:  I think you usually need to 
be messing around with expressions to see it.  You can also get it in 
simpler ways with nonsensical expressions, like

 > 1(1)
Error: attempt to apply non-function

I'd say you'll need to do a traceback() to find out where this is coming 
from.  It's probably also worthwhile to track down those warnings() that 
you were told about.

Duncan Murdoch

> 
> 
> Is there any way to figure out what this means, or where I might look 
> for the error in the source?
> 
> Here's a capture of the associated log. I am running R 2.8 under Ubuntu 
> 8.04.
> 
> 
> Thanks,
> 
> 
>  > odfWeave("/home/rob/Trauma/Report_2_draft.odt", 
> "/home/rob/Trauma/Report_2_draft_out.odt")
>   Copying  /home/rob/Trauma/Report_2_draft.odt
>   Setting wd to  /tmp/Rtmp2tlRz0/odfWeave23115040235
>   Unzipping ODF file using unzip -o Report_2_draft.odt
> Archive:  Report_2_draft.odt
>  extracting: mimetype               
>    creating: Configurations2/statusbar/
>   inflating: Configurations2/accelerator/current.xml 
>    creating: Configurations2/floater/
>    creating: Configurations2/popupmenu/
>    creating: Configurations2/progressbar/
>    creating: Configurations2/menubar/
>    creating: Configurations2/toolbar/
>    creating: Configurations2/images/Bitmaps/
>   inflating: layout-cache           
>   inflating: content.xml            
>   inflating: styles.xml             
>  extracting: meta.xml               
>   inflating: Thumbnails/thumbnail.png 
>   inflating: settings.xml           
>   inflating: META-INF/manifest.xml  
> 
>   Removing  Report_2_draft.odt
>   Creating a Pictures directory
> 
>   Pre-processing the contents
>   Sweaving  content.Rnw
> 
>   Writing to file content_1.xml
>   Processing code chunks ...
>     1 : term hide(label=loadData)
> d    2 : term verbatim(label=SiteHist)
> ate()
>     3 : term verbatim(label=AgeSex)
>     4 : term verbatim(label=Sitesex)
>     5 : term verbatim(label=SiteHeadNeck)
>     6 : term verbatim(label=SiteFace)
>     7 : term verbatim(label=SiteChest)
>     8 : term verbatim(label=SiteAbdomnen)
>     9 : term verbatim(label=SiteGCS_Eyes)
>    10 : term verbatim(label=SiteGCS_Verbal)
>    11 : term verbatim(label=SiteGCS_Motor)
>    12 : term verbatim(label=SiteGCS_total)
>    13 : term verbatim(label=SBP)
>    14 : term verbatim(label=DBP)
>    15 : term verbatim(label=HR)
>    16 : term verbatim(label=RESPIRATION)
>    17 : term verbatim(label=PF_ADMIT)
>    18 : term verbatim(label=O2_admit)
>    19 : term verbatim(label=Ph_admit)
>    20 : term verbatim(label=DEFICIT)
>    21 : term verbatim(label=lactic_acid)
> 
>   'content_1.xml' has been Sweaved
> 
>   Removing content.xml
> 
>   Post-processing the contents
> Error in .Call("RS_XML_Parse", file, handlers, endElementHandlers, 
> as.logical(addContext),  :
>   attempt to apply non-function
> In addition: There were 50 or more warnings (use warnings() to see the 
> first 50)
>  > date()
> [1] "Thu Oct 23 12:18:18 2008"
> 
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