[R] ParallelR

[Hesen Peng]

But when I use the function makeSOCKmpi I am required to input my
password to local computer, right? I haven't figured out how to do
that when using a Sun Grid Engine. Do you have any suggestions? Thanks
a lot.

2008/10/9 Martin Morgan <mtmorgan at fhcrc.org>:
> snow can use native sockets, i.e., no additional dependencies. Martin
>
> "Hesen Peng" <hesen.peng at gmail.com> writes:
>
>> Hi,
>>
>> I wonder if there are any parallel package which do not rely on mpi or pvm?
>>
>> On Wed, Oct 8, 2008 at 5:09 PM, Markus Schmidberger
>> <schmidb at ibe.med.uni-muenchen.de> wrote:
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>>>
>>> Hi Chi,
>>>
>>> ParallelR is a commercial software to run R in parallel. It is working
>>> very well. We tested it at a small linux cluster.
>>>
>>> You also can use R and the parallel packages (snow, Rmpi, nws, ...)
>>> packages. All Open Source and for free. You probably will have some more
>>> work installing the complete system, but the same results.
>>>
>>> You also can use a batch system with R. We are using Sun Grid Engine!
>>> (this should be even possible for parallelR)
>>>
>>> Best
>>> Markus
>>>
>>>
>>> Chi Chan wrote:
>>>> Anyone using or has access to ParallelR? I was looking at the page and
>>>> found nothing really useful!
>>>>
>>>> http://www.revolution-computing.com/sitegenius/topic.php?id=195
>>>>
>>>> I want to see if I can run R on a cluster of workstation, and use
>>>> batch systems like Grid Engine or Xgrid:
>>>>
>>>> http://gridengine.sunsource.net/
>>>> http://ww.apple.com/acg/xgrid/
>>>>
>>>> --Chi
>>>>
>>>> ______________________________________________
>>>> R-help at r-project.org mailing list
>>>> https://stat.ethz.ch/mailman/listinfo/r-help
>>>> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
>>>> and provide commented, minimal, self-contained, reproducible code.
>>>
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>>> ______________________________________________
>>> R-help at r-project.org mailing list
>>> https://stat.ethz.ch/mailman/listinfo/r-help
>>> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
>>> and provide commented, minimal, self-contained, reproducible code.
>>>
>>
>>
>>
>> --
>> 彭河森 Hesen Peng
>> http://hesen.peng.googlepages.com/
>> ______________________________________________
>> R-help at r-project.org mailing list
>> https://stat.ethz.ch/mailman/listinfo/r-help
>> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
>> and provide commented, minimal, self-contained, reproducible code.
>
> --
> Martin Morgan
> Computational Biology / Fred Hutchinson Cancer Research Center
> 1100 Fairview Ave. N.
> PO Box 19024 Seattle, WA 98109
>
> Location: Arnold Building M2 B169
> Phone: (206) 667-2793
>



-- 
彭河森 Hesen Peng
http://hesen.peng.googlepages.com/