[R] Nested Clade Analysis

[Christoph Heibl]

Hi,

to my knowledge there is none, but some time ago I wrote some code  
that prepares the input files for GeoDis and reads the output. Doing  
a NCA was a matter of seconds! I did not go on developing it, though,  
because I do not use NCA any more and the current code is very poorly  
documented.

If you are experienced in reading and modifying R code, I could hand  
it on to you and you could modify it according to your needs. The use  
of the code is straightforward if you manage to convert your data to  
an object of a special class which I have defined for that purpose.  
By the way, the code does not support reticulations in the network  
and you might encounter bugs in it, because it was not tested with  
datasets other that mine.

If you are interested, drop me a line.





________________________________________________________

Christoph Heibl

Systematic Botany
Ludwig-Maximilians-Universität München
Menzinger Str. 67
D-80638 München
GERMANY

phone:     +49-(0)89-17861-251
e-mail:    heibl at lmu.de

http://www.christophheibl.de/ch-home.html

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On Nov 22, 2008, at 3:58 PM, knussear wrote:

>
> Hi
>
> Wondering if anyone knows of a package that does Nested Clade  
> Analysis?
>
> Thanks
> -- 
> View this message in context: http://www.nabble.com/Nested-Clade- 
> Analysis-tp20637180p20637180.html
> Sent from the R help mailing list archive at Nabble.com.
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