[R] Quantile normalization in MAANOVA

[Dipen Sangurdekar]

hello

I am dealing with a dataset in which I wish to do both quantile and 
regional lowess normalization using the MAANOVA package. I looked 
through the documentation for MAANOVA, and it appears that there is no 
in-built function that does qq normalization on the data structure that 
is generated after lowess (after using createData and transform.madata) 
in maanova.

Is it okay to do quantile normalization on raw data and then do lowess 
normalization? Or is there any other way?

Thanks
Dipen