[R] Trying to install rjags on Mac OS X 10.5

[0093]

Dear Lindsay,
 

If you "pkgconfig" installed by MacPorts.
Maybe it likely to be caused by JAGS install.

You'll better to do

sudo make uninstall
./configure --prefix=/usr/local --mandir=/usr/local/share/man
make
sudo make install
sudo R CMD INSTALL -l /Library/Frameworks/R.framework/Resources/library
rjags_1.0.0-1.tar.gz


If it doesn't work...
There is the another way.
If you can find "jags.pc" under "/usr/local/lib/pkgconfig".

sudo cp  /usr/local/lib/pkgconfig/jags.pc /opt/local/lib/pkgconfig/
sudo R CMD INSTALL -l /Library/Frameworks/R.framework/Resources/library
rjags_1.0.0-1.tar.gz


I hope everything will be OK.
sincerely

Kosuke



Lindsay Stirton wrote:
> 
> Thanks Rob,
> 
> Since I already had Xcode 3.0, I re-installed gfortran (from the R 
> website, not
> from the .dmg) and gcc4.2.1 preview. I am afraid the outcome was the 
> same, i.e.
> jags 1.0.1 not found.
> 
> Yes I do use Macports (and formery used Fink, which is still installed).
> What
> issues does this raise? On your suggestion, I made sure that both were up
> to
> date--still no success.
> 
> Your offer to send me a template directory to figure things out from is
> very
> much appreciated. Yes please!
> 
> Lindsay
> 
> 
> Quoting Rob Goedman <goedman at mac.com>:
> 
>> Hi Lindsay,
>>
>> Did have some difficulties as well, but got it to work using 
>> Xcode3.0,  Apple's gcc4.2preview release and gfortran 4.2.1 from 
>> Simon's web  site. This was on R-devel though, on a Mac Intel.
>>
>> Can it find the jags executable say from your home directory? Have 
>> you  tried 'make check' in the classic-bugs/vol1 or vol2 example dirs 
>> (in  the Terminal)? That would indeed confirm jags is running fine.
>>
>> For rjags, I am a bit worried about the /opt/... . Did you at some  
>> point install software from Fink or Darwin ports? Until I installed  
>> the above newer toolset, I had never been able to get rjags to work.
>>
>> Of course you don't really need rjags, only coda. I have also  
>> installed the package 'arm' and the packages arm depends on (Matrix,  
>> lattice, lme4, R2WinBugs). If it would help I can send you a  
>> 'template' dir for the line example that does not use rjags.
>>
>> A dependency I ran into was coda v 13.1, as of a couple of days ago  
>> not available as a binary package,
>> but available as a source package on CRAN.
>>
>> Rob
>>
>> On Dec 30, 2007, at 8:27 AM, Lindsay Stirton wrote:
>>
>>> Greetings,
>>>
>>> I wonder if anyone can offer any help or advice--even direction to an
>>> appropriate source of advice. I am trying to install rjags 1.0.1 on  
>>> Mac OS X
>>> 10.5 (see http://www-fis.iarc.fr/~martyn/software/jags/). I have  
>>> R.app 2.6.1
>>> installed.
>>>
>>> JAGS 1.0.1 is apparently successfully installed. I (think I) know  
>>> this because
>>> when I type 'jags' into Terminal, I get the following:
>>>
>>> Macintosh:Desktop ljs$ jags
>>> Welcome to JAGS 1.0.1 on Thu Dec 27 20:56:09 2007
>>> JAGS is free software and comes with ABSOLUTELY NO WARRANTY
>>> Loading module: basemod
>>> Loading module: bugs
>>> .
>>>
>>> However, when I try to install rjags, I get the following problem.
>>>
>>> Macintosh:Desktop ljs$ sudo R CMD INSTALL rjags_1.0.1-1.tar.gz
>>> Password:
>>> * Installing to library '/Library/Frameworks/R.framework/Resources/
>>> library'
>>> * Installing *source* package 'rjags' ...
>>> checking for pkg-config... /opt/local/bin/pkg-config
>>> checking pkg-config is at least version 0.9.0... yes
>>> checking for JAGS... configure: error: Package requirements (jags =  
>>> 1.0.1) were
>>> not met:
>>>
>>> No package 'jags' found
>>>
>>> Consider adjusting the PKG_CONFIG_PATH environment variable if you
>>> installed software in a non-standard prefix.
>>>
>>> ERROR: configuration failed for package 'rjags'
>>> ** Removing '/Library/Frameworks/R.framework/Resources/library/rjags'
>>>
>>> I am really not sure what the problem is. I have (I think) set the 
>>> proper
>>> environment variables correctly. See below:
>>>
>>> Macintosh:Desktop ljs$ which jags
>>> /usr/local/bin/jags
>>> Macintosh:Desktop ljs$ echo $PKG_CONFIG_PATH
>>> /usr/local/bin
>>>
>>> I should say that I had many other problems
>>> along the way--gfortran not originally installed properly, R CMD 
>>> INSTALL
>>> couldn't find pkg-config. However, the above description shows the 
>>> problems
>>> remaining even after I have done a little homework.
>>>
>>> Best wishes,
>>>
>>> Lindsay Stirton
>>>
>>> ______________________________________________
>>> R-help at r-project.org mailing list
>>> https://stat.ethz.ch/mailman/listinfo/r-help
>>> PLEASE do read the posting guide
>>> http://www.R-project.org/posting-guide.html
>>> and provide commented, minimal, self-contained, reproducible code.
>>
>>
> 
> ______________________________________________
> R-help at r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide
> http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.
> 
> 

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