[R] Building a package and Depends search

[john seers (IFR)]

Thank you very much for your help - that fixed it. Sorry I did not see
it in the manual.

Regards


JS 



 
---
-----Original Message-----
From: Prof Brian Ripley [mailto:ripley at stats.ox.ac.uk] 
Sent: 19 February 2008 14:14
To: john seers (IFR)
Cc: r-help at r-project.org
Subject: Re: [R] Building a package and Depends search

On Tue, 19 Feb 2008, john seers (IFR) wrote:

>
>
> Hello R experts
>
> I am just learning how to build a package so this is probably a basic 
> question. I have read the manual( well, to be more truthful, am 
> reading) the manual, and I have searched the archives to the best of
my ability.

You could have searched for R_LIBS in the manual (see below).

> I am on Windows.
>
> When running the command "R CMD check packagename" I get this type of
> error:
>
> * checking package dependencies ... ERROR Packages required but not 
> available:
>  chron
>
> I think this is because I install my packages in "mylibrary" and use 
> "R_LIBS=C:/PROGRA~1/R/mylibrary" in my Renviron.site file. If I move 
> the package to the R main library it fixes the problem. But rather 
> defeats the intention behind having a separate mylibrary.
>
> Can anybody tell me how to solve this? That is keep my installed 
> packages in mylibrary but get the package check/build to work? I guess
> Depends: has a search path but I cannot find it or how to alter it. 
> Can anybody point me to some documentation?

Set the environment variable R_LIBS in your commands windows/shell.
As the manual says:

   @quotation Note
   @code{R CMD check} and @code{R CMD build} run @R{} with
   @option{--vanilla}, so none of the user's startup files are read.  If
   you need @env{R_LIBS} set (to find packages in a non-standard
library)
   you will need to set it in the environment.
   @end quotation


>
> Thanks very much for any help.
>
>
> Regards
>
>
> John Seers
>
>
>
>
>
>
>> sessionInfo()
> R version 2.6.2 (2008-02-08)
> i386-pc-mingw32
>
> locale:
> LC_COLLATE=English_United Kingdom.1252;LC_CTYPE=English_United
> Kingdom.1252;LC_MONETARY=English_United
> Kingdom.1252;LC_NUMERIC=C;LC_TIME=English_United Kingdom.1252
>
> attached base packages:
> [1] stats     graphics  grDevices datasets  utils     methods   base
>
>
> other attached packages:
> [1] chron_2.3-20  limma_2.12.0  RWinEdt_1.7-9
>>
>
>
>
>
>
>
> ---
>
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> PLEASE do read the posting guide 
> http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.
>

-- 
Brian D. Ripley,                  ripley at stats.ox.ac.uk
Professor of Applied Statistics,  http://www.stats.ox.ac.uk/~ripley/
University of Oxford,             Tel:  +44 1865 272861 (self)
1 South Parks Road,                     +44 1865 272866 (PA)
Oxford OX1 3TG, UK                Fax:  +44 1865 272595