[R] sliding window over a large vector
Gabor Grothendieck
ggrothendieck at gmail.com
Tue Dec 16 14:23:05 CET 2008
There seems to be something wrong:
> slide(c(1, 1, 0, 1), 2)
[1] 2 2
but the output should be c(2, 1, 2)
At any rate try this:
library(zoo)
3 * rollmean(x, 3)
On Mon, Dec 15, 2008 at 11:19 PM, Chris Oldmeadow
<c.oldmeadow at student.qut.edu.au> wrote:
> Hi all,
>
> I have a very large binary vector, I wish to calculate the number of 1's
> over sliding windows.
>
> this is my very slow function
>
> slide<-function(seq,window){
> n<-length(seq)-window
> tot<-c()
> tot[1]<-sum(seq[1:window]) for (i in 2:n) {
> tot[i]<- tot[i-1]-seq[i-1]+seq[i]
> }
> return(tot)
> }
>
> this works well for for reasonably sized vectors. Does anybody know a way
> for large vectors ( length=12 million), im trying to avoid using C.
>
> Thanks,
> Chris
>
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