[R] Rcommander installation fails on Fedora 9
John Sorkin
jsorkin at grecc.umaryland.edu
Fri Aug 15 23:02:49 CEST 2008
Paul,
I installed R-devel as root, and then re-tried to install R-cmdr as a
regular users. Unfortunately I still receive multiple error messages.
Any suggestions? I have pasted on set of error messages below:
* DONE (multcomp)
* Installing *source* package 'party' ...
** libs
gcc -m32 -std=gnu99 -I/usr/include/R -I/usr/local/include -fpic -O2
-g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
--param=ssp-buffer-size=4 -m32 -march=i386 -mtune=generic
-fasynchronous-unwind-tables -c Classes.c -o Classes.o
gcc -m32 -std=gnu99 -I/usr/include/R -I/usr/local/include -fpic -O2
-g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
--param=ssp-buffer-size=4 -m32 -march=i386 -mtune=generic
-fasynchronous-unwind-tables -c Convenience.c -o Convenience.o
gcc -m32 -std=gnu99 -I/usr/include/R -I/usr/local/include -fpic -O2
-g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
--param=ssp-buffer-size=4 -m32 -march=i386 -mtune=generic
-fasynchronous-unwind-tables -c Distributions.c -o Distributions.o
gcc -m32 -std=gnu99 -I/usr/include/R -I/usr/local/include -fpic -O2
-g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
--param=ssp-buffer-size=4 -m32 -march=i386 -mtune=generic
-fasynchronous-unwind-tables -c IndependenceTest.c -o IndependenceTest.o
IndependenceTest.c: In function ‘C_GlobalTest’:
IndependenceTest.c:138: warning: unused variable ‘ithiswhichNA’
IndependenceTest.c:136: warning: unused variable ‘thiswhichNA’
gcc -m32 -std=gnu99 -I/usr/include/R -I/usr/local/include -fpic -O2
-g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
--param=ssp-buffer-size=4 -m32 -march=i386 -mtune=generic
-fasynchronous-unwind-tables -c LinearStatistic.c -o LinearStatistic.o
gfortran -m32 -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2
-fexceptions -fstack-protector --param=ssp-buffer-size=4 -m32
-march=i386 -mtune=generic -fasynchronous-unwind-tables
-I/usr/lib/gfortran/modules -c mvt.f -o mvt.o
mvt.f:5.72:
& MAXPTS, ABSEPS, RELEPS, ERROR, VALUE, INFORM )
1
Warning: Line truncated at (1)
mvt.f:84.33:
SUBROUTINE MVSUBR( N, W, NF, F )
1
Warning: Unused dummy argument 'nf' at (1)
mvt.f:179.72:
IF ( INFI(1) .NE. 0 ) VL = VL - MVSTDT( NU, A(1)-DL(1) )
1
Warning: Line truncated at (1)
mvt.f:194.72:
SUBROUTINE MVVLSB( N,W,R,DL,INFI, A,B,COV, Y, DI,EI, ND, VALUE )
1
Warning: Line truncated at (1)
mvt.f:362.72:
IF ( INFI(I) .NE. 0 ) Y(I) = MVTDNS( 0, AMIN )
1
Warning: Line truncated at (1)
mvt.f:363.72:
IF ( INFI(I) .NE. 1 ) Y(I) = Y(I) - MVTDNS( 0, BMIN )
1
Warning: Line truncated at (1)
mvt.f:817.72:
IF ( R .LT. 0 ) BVN = -BVN + MAX( ZERO, MVPHI(-H) - MVPHI(-K) )
1
Warning: Line truncated at (1)
mvt.f:858.72:
DOUBLE PRECISION FUNCTION MVBVT( NU, LOWER, UPPER, INFIN, CORREL )
1
Warning: Line truncated at (1)
mvt.f:1029.72:
bvt = atan2(-snu*(hkn*qhrk+hpk*hkrn),hkn*hkrn-nu*hpk*qhrk)/tpi
1
Warning: Line truncated at (1)
mvt.f:1284.72:
FINEST(K) = FINEST(K) + ( FINVAL(K) - FINEST(K) )/( 1+VARPRD )
1
Warning: Line truncated at (1)
mvt.f:1476.72:
VALUES(J) = VALUES(J) + ( FS(J) - VALUES(J) )/( 2*K-1 ) Warning: Line truncated at (1)
gcc -m32 -std=gnu99 -I/usr/include/R -I/usr/local/include -fpic -O2
-g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
--param=ssp-buffer-size=4 -m32 -march=i386 -mtune=generic
-fasynchronous-unwind-tables -c Node.c -o Node.o
Node.c: In function ‘C_Node’:
Node.c:57: warning: unused variable ‘dweights’
gcc -m32 -std=gnu99 -I/usr/include/R -I/usr/local/include -fpic -O2
-g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
--param=ssp-buffer-size=4 -m32 -march=i386 -mtune=generic
-fasynchronous-unwind-tables -c Predict.c -o Predict.o
Predict.c: In function ‘C_get_node’:
Predict.c:124: warning: unused variable ‘dweights’
Predict.c:123: warning: unused variable ‘weights’
gcc -m32 -std=gnu99 -I/usr/include/R -I/usr/local/include -fpic -O2
-g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
--param=ssp-buffer-size=4 -m32 -march=i386 -mtune=generic
-fasynchronous-unwind-tables -c RandomForest.c -o RandomForest.o
gcc -m32 -std=gnu99 -I/usr/include/R -I/usr/local/include -fpic -O2
-g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
--param=ssp-buffer-size=4 -m32 -march=i386 -mtune=generic
-fasynchronous-unwind-tables -c S3Classes.c -o S3Classes.o
S3Classes.c: In function ‘S3get_sumweights’:
S3Classes.c:61: warning: value computed is not used
S3Classes.c:62: warning: control reaches end of non-void function
gcc -m32 -std=gnu99 -I/usr/include/R -I/usr/local/include -fpic -O2
-g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
--param=ssp-buffer-size=4 -m32 -march=i386 -mtune=generic
-fasynchronous-unwind-tables -c Splits.c -o Splits.o
gcc -m32 -std=gnu99 -I/usr/include/R -I/usr/local/include -fpic -O2
-g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
--param=ssp-buffer-size=4 -m32 -march=i386 -mtune=generic
-fasynchronous-unwind-tables -c SurrogateSplits.c -o SurrogateSplits.o
gcc -m32 -std=gnu99 -I/usr/include/R -I/usr/local/include -fpic -O2
-g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
--param=ssp-buffer-size=4 -m32 -march=i386 -mtune=generic
-fasynchronous-unwind-tables -c TestStatistic.c -o TestStatistic.o
gcc -m32 -std=gnu99 -I/usr/include/R -I/usr/local/include -fpic -O2
-g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
--param=ssp-buffer-size=4 -m32 -march=i386 -mtune=generic
-fasynchronous-unwind-tables -c TreeGrow.c -o TreeGrow.o
gcc -m32 -std=gnu99 -I/usr/include/R -I/usr/local/include -fpic -O2
-g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector
--param=ssp-buffer-size=4 -m32 -march=i386 -mtune=generic
-fasynchronous-unwind-tables -c Utils.c -o Utils.o
Utils.c: In function ‘C_MPinv’:
Utils.c:187: warning: unused variable ‘svdx’
gcc -m32 -std=gnu99 -shared -L/usr/local/lib -o party.so Classes.o
Convenience.o Distributions.o IndependenceTest.o LinearStatistic.o mvt.o
Node.o Predict.o RandomForest.o S3Classes.o Splits.o SurrogateSplits.o
TestStatistic.o TreeGrow.o Utils.o -L/usr/lib/R/lib -lRlapack
-L/usr/lib/R/lib -lRblas -lgfortran -lm -lgfortran -lm -L/usr/lib/R/lib
-lR
Thanks,
John
John Sorkin M.D., Ph.D.
Chief, Biostatistics and Informatics
Baltimore VA Medical Center GRECC,
University of Maryland School of Medicine Claude D. Pepper OAIC,
University of Maryland Clinical Nutrition Research Unit, and
Baltimore VA Center Stroke of Excellence
University of Maryland School of Medicine
Division of Gerontology
Baltimore VA Medical Center
10 North Greene Street
GRECC (BT/18/GR)
Baltimore, MD 21201-1524
(Phone) 410-605-7119
(Fax) 410-605-7913 (Please call phone number above prior to faxing)
jsorkin at grecc.umaryland.edu
>>> "Paul Smith" <phhs80 at gmail.com> 08/15/08 4:02 PM >>>
On Fri, Aug 15, 2008 at 6:15 PM, John Sorkin
<jsorkin at grecc.umaryland.edu> wrote:
> Fedora 9
> R 2.7.1
>
> I tried to install R on my Linux system using
> install.packages("Rcmdr", depen> I received many, many, many error messages. I hope someone can suggest
a
> fix.
>
> The output from warnings()
> is listed below. A more detailed list of errors from one of the failed
> installations is listed below the warnings:
Have you R-devel rpm installed?
Paul
______________________________________________
R-help at r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide
http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
Confidentiality Statement:
This email message, including any attachments, is for th...{{dropped:6}}
More information about the R-help
mailing list