[R] Autogenerate tags in tag=value pairs for
Jon Olav Vik
j.o.vik at bio.uio.no
Wed Mar 7 07:40:02 CET 2007
Dear list,
Is there a way to programmatically specify tag names for the ... (ellipsis)
part of the argument list to a function? In other words, a way to do this:
x <- data.frame(A=1:5)
if the name "A" was not hardcoded but given by a variable, and without
resorting to:
x <- data.frame(1:5)
names(x) <- "A"
A longer example describing my actual problem follows. Thanks in advance for
any help.
Best regards,
Jon Olav
I want to use function transformBy() in package doBy. The key is that the "...
Further arguments of the form tag=value" require "tag" to be specified,
otherwise the output does not include the results of my groupwise calculations.
Quoting the documentation:
" transformBy(doBy)
" Function to make groupwise transformations of data
" by applying the transform function to subsets of data.
"
" Usage
" transformBy(formula, data, ...)
"
" Arguments
" formula A formula with only a right hand side, see examples below
" data A data frame
" ... Further arguments of the form tag=value
### example ###
# a function to replace NAs with the last non-NA value from above
filldown <- function(x) {
notna <- !is.na(x) # elements with values
ix <- cumsum(notna) # index to previous element (but zeros where we need NA)
ix[ix==0] <- NA # use [NA] as index to produce NA in output
return(x[notna][ix]) # for each: return previous value if found, else NA
}
# illustration of how it works
tmp <- c(NA,NA,1,NA,3,NA,NA)
cbind(tmp,filldown(tmp))
# I now want to apply filldown() to subsets of a data frame
# and I want it to work on several columns
# generate a data frame for illustration,
# with a few non-NA values scattered round
set.seed(5) # repeatable example
x <- data.frame(id = rep(1:4,each=6), v1=NA, v2=NA)
ix <- which(runif(nrow(x))>0.75)
x[ix,2] <- rpois(length(ix),5)
ix <- which(runif(nrow(x))>0.75)
x[ix,3] <- rpois(length(ix),5)
x
library(doBy)
# the hard way -- works as required,
# but I would like not having to hardcode column names v1 etc.
transformBy(~id,data=x,v1.fd = filldown(v1),v2.fd = filldown(v2))
# does not work because
# output includes only columns explicitly mentioned in the ... argument
transformBy(~id,data=x,function(y) lapply(y,filldown))
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