[R] install error for RBGL_1.12.0 on linux

xinan yang xnyang at seu.edu.cn
Mon Jul 30 05:16:35 CEST 2007


Dear all,

I meet error when installing the newest Bioconductor packages 2.0 for R 
2.5.1.

the enviroments are as bellow:

 > sessionInfo()
R version 2.5.1 (2007-06-27)
i686-pc-linux-gnu

locale:
LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=en_US.UTF-8;LC_MONETARY=en_US.UTF-8;LC_MESSAGES=en_US.UTF-8;LC_PAPER=en_US.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C

attached base packages:
[1] "stats"     "graphics"  "grDevices" "utils"     "datasets"  "methods"
[7] "base"
 >

The error messages are partly as:
.....
 boost::vec_adj_list_vertex_id_map<boost::property<boost::vertex_color_t,
   boost::default_color_type, boost::no_property>, size_t>&)'
make: *** [interfaces.o] Error 1
chmod: failed to get attributes of 
`/usr/local/lib/R/library/RBGL/libs/*': No such file or directory
ERROR: compilation failed for package 'RBGL'


but, there exists such directory " /usr/local/lib/R/library/RBGL/libs/" 
in my computer:
[root at yxnlinux getBioC2.5-R2.5.1]# ls -al 
/usr/local/lib/R/library/RBGL/libs/
total 17364
drwxr-xr-x    2 root     root         4096 Dec 23  2005 .
drwxr-xr-x   17 root     root         4096 Dec 23  2005 ..
-rwxr-xr-x    1 root     root     17743886 Dec 23  2005 RBGL.so


Please help me to fix it.


THanks,


xinan



More information about the R-help mailing list