[R] problem with compilation of R on Solaris 10 in x86

[Wolfgang Raffelsberger]

Dear List,
we're trying to install R on Solaris10 on a x86 (amd64).

During the installation we pass successfully the ./configure but we get 
an error through the built-in function "_isnan" which we see existing in 
/lib

When passing the command "make" we get :

gcc -std=gnu99 -I../../src/extra/zlib -I../../src/extra/bzip2 
-I../../src/extra/pcre   -I. -I../../src/include -I../../src/include 
-I/usr/local/include -DHAVE_CONFIG_H -D__NO_MATH_INLINES  -g -O2 -c 
serialize.c -o serialize.o
In file included from ../../src/include/Rinternals.h:921,
                 from ../../src/include/Defn.h:72,
                 from serialize.c:29:
../../src/include/Rinlinedfuns.h: In function `fmin2_int':
../../src/include/Rinlinedfuns.h:602: warning: implicit declaration of 
function `__builtin_isnan'

[... and ...]
gcc -std=gnu99  -L/usr/local/lib -o R.bin Rmain.o CConverters.o 
CommandLineArgs.o  Rdynload.o Renviron.o RNG.o  apply.o arithmetic.o 
apse.o array.o attrib.o  base.o bind.o builtin.o  character.o coerce.o 
colors.o complex.o connections.o context.o  cov.o cum.o  dcf.o 
datetime.o debug.o deparse.o deriv.o  dotcode.o dounzip.o dstruct.o 
duplicate.o  engine.o envir.o errors.o eval.o  format.o fourier.o  
gevents.o gram.o gram-ex.o graphics.o  identical.o internet.o 
iosupport.o  lapack.o list.o localecharset.o logic.o  main.o mapply.o 
match.o memory.o model.o  names.o  objects.o optim.o optimize.o 
options.o  par.o paste.o pcre.o platform.o  plot.o plot3d.o plotmath.o  
print.o printarray.o printvector.o printutils.o qsort.o  random.o 
regex.o registration.o relop.o rlocale.o  saveload.o scan.o seq.o 
serialize.o size.o sort.o source.o split.o  sprintf.o startup.o 
subassign.o subscript.o subset.o summary.o sysutils.o  unique.o util.o  
version.o vfonts.o xxxpr.o  mkdtemp.o ../unix/libun!
ix.a ../appl/libappl.a ../nmath/libnmath.a -L../../lib -lRblas 
-L/opt/sfw/lib/gcc/i386-pc-solaris2.10/3.4.2 -L/usr/ccs/bin 
-L/opt/sfw/lib -lg2c -lm -lgcc_s  ../extra/zlib/libz.a  
../extra/bzip2/libbz2.a ../extra/pcre/libpcre.a  
../extra/intl/libintl.a  -lreadline -lncurses -lnsl -lsocket -ldl -lm
Undefined                       first referenced
 symbol                             in file
__builtin_isnan                     arithmetic.o
ld: fatal: Symbol referencing errors. No output written to R.bin
collect2: ld returned 1 exit status


Thank's in advance for all hints how we could overcome this problem,
Wolfgang

 

. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 
. . . . .

Wolfgang Raffelsberger, PhD
Laboratoire de BioInformatique et Génomique Intégrative
IGBMC
1 rue Laurent Fries,  67404 Illkirch  Strasbourg,  France
Tel (+33) 388 65 3300         Fax (+33) 388 65 3276
http://www-bio3d-igbmc.u-strasbg.fr/~wraff
wolfgang.raffelsberger at igbmc.u-strasbg.fr