[R] dyn.load problem under linux
Domenico Vistocco
vistocco at unicas.it
Fri Feb 9 21:31:16 CET 2007
Dear HelpeRs,
I am trying to use an thirdy-part library under Linux (the library is
developed
both for Windows and for Linux).
I have tried different solutions (with the library developer) but we are
not able to
solve the problem. So I try to ask for your help in order to escape from
the full stop
where we are at the moment.
The problem looks to depend on the dyn.load function (technical details
are below).
Thanks a lot for your work (it is an invaluable resource).
Best,
domenico
The library is called POP.R. I installed it but I have the following
error when
I try to load it:
---------------------------------------------------------------------------------------------------------------------------------------------
> library(POP.R)
Error in dyn.load(x, as.logical(local), as.logical(now)) :
unable to load shared library
'/usr/lib/R/library/POP.R/libs/ezlic20.so':
libstdc++-libc6.2-2.so.3: cannot open shared object file: No such file
or directory
Error in library(POP.R) : .First.lib failed for 'POP.R'
---------------------------------------------------------------------------------------------------------------------------------------------
Nevertheless the file exists:
---------------------------------------------------------------------------------------------------------------------------------------------
> file.exists("/usr/lib/R/library/POP.R/libs/ezlic20.so")
[1] TRUE
---------------------------------------------------------------------------------------------------------------------------------------------
I tried also directly using the dyn.load function on the command line
(without and with the local flag):
---------------------------------------------------------------------------------------------------------------------------------------------
> dyn.load("/usr/lib/R/library/POP.R/libs/ezlic20.so",local=FALSE)
Error in dyn.load(x, as.logical(local), as.logical(now)) :
unable to load shared library
'/usr/lib/R/library/POP.R/libs/ezlic20.so':
libstdc++-libc6.2-2.so.3: cannot open shared object file: No such file
or directory
> dyn.load("/usr/lib/R/library/POP.R/libs/ezlic20.so",local=TRUE)
Error in dyn.load(x, as.logical(local), as.logical(now)) :
unable to load shared library
'/usr/lib/R/library/POP.R/libs/ezlic20.so':
libstdc++-libc6.2-2.so.3: cannot open shared object file: No such file
or directory
---------------------------------------------------------------------------------------------------------------------------------------------
In the lib directory there is also another library, for which I have a
different error
message using the dyn.load function (I have the same message using
local=FALSE):
---------------------------------------------------------------------------------------------------------------------------------------------
> dyn.load("/usr/lib/R/library/POP.R/libs/pop_BurSt.so")
Error in dyn.load(x, as.logical(local), as.logical(now)) :
unable to load shared library
'/usr/lib/R/library/POP.R/libs/pop_BurSt.so':
/usr/lib/R/library/POP.R/libs/pop_BurSt.so: undefined symbol:
getChainedKeyId
---------------------------------------------------------------------------------------------------------------------------------------------
My operating system is Ubuntu 6.10 - Edgy.
Follow the answers to version and sessionInfo:
--------------------------------------------------------------------------------------------------
> version
_
platform i486-pc-linux-gnu
arch i486
os linux-gnu
system i486, linux-gnu
status
major 2
minor 4.1
year 2006
month 12
day 18
svn rev 40228
language R
version.string R version 2.4.1 (2006-12-18)
> sessionInfo()
R version 2.4.1 (2006-12-18)
i486-pc-linux-gnu
locale:
LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=en_US.UTF-8;LC_MONETARY=en_US.UTF-8;LC_MESSAGES=en_US.UTF-8;LC_PAPER=en_US.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_US.UTF-8;LC_IDENTIFICATION=C
attached base packages:
[1] "stats" "graphics" "grDevices" "utils" "datasets" "methods"
[7] "base"
--------------------------------------------------------------------------------------------------
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