[R] Problem installing R-2.4.1 on AIX 5.3

[Prof Brian Ripley]

Please check the archives: these problems are known, and await help from 
an AIX expert.

On Fri, 2 Feb 2007, Francesco Falciano wrote:

> Dear all,
> I have some problems to install R-2.4.1 on AIX 5.3.
>
> Configure string:
>
> ./configure  --with-readline=no LDFLAGS='-bshared' --with-jpeglib=no --with-libpng=no --with-lapack=no --prefix=/cineca/prod/Bioinf/R-2.4.1
>
> configure .site=
> #! /bin/sh
> CC=xlc
> F77=xlf
> MAIN_LDFLAGS=-Wl,-brtl
> SHLIB_LDFLAGS=-Wl,-G
> CXX=xlc
> CXXFLAGS=' -g -O'
> SHLIB_LDFLAGS=-W1, -G
> MAKE=gmake
>
> Configure ends successfully, but the make fails:
>
> ---cut
> de -DHAVE_CONFIG_H -I/usr/local/include      -g -c init.c -o init.o
>        xlc -qlanglvl=extc99 -Wl,-G -Wl,-G -Wl,-bexpall -Wl,-bnoentry -bshared -o grDevices.so chull.o devNull.o devPicTeX.o devPS.o devQuartz.o init.o  -lm
> Error in solve.default(rgb) : lapack routines cannot be loaded
> In addition: Warning message:
> unable to load shared library '/cineca/prod/Bioinf/R-2.4.1/modules//lapack.so':
>  rtld: 0712-001 Symbol _xldipow/cineca/prod/Bioinf/R-2.4.1/lib/libRlapack.so was referenced
>      from module /cineca/prod/Bioinf/R-2.4.1/lib/libRlapack.so(), but a runtime definition
>      of the symbol was not found.
> rtld: 0712-001 Symbol _log was referenced
>      from module /cineca/prod/Bioinf/R-2.4.1/lib/libRlapack.so(), but a runtime definition
>      of the symbol was not found.
> rtld: 0712-001 Symbol _sqrt was referenced
>      from module /cineca/prod/Bioinf/R-2.4.1/lib/libRlapack.so(), but a runtime definition
>      of the symbol was not found.
> rtld: 0712-001 Symbol idamax was referenced
>      from module /cineca/prod/Bioinf/R-2.4.1/lib/libRlapack.so(), but a runtime definition
>      of the symbol was not found.
> rtld: 0712-001 Symbol dger was referenced
>      from module /cineca/prod/Bioinf/R-2.4.1/lib/libRlapack.so(), but a runtime definition
>      of the symbol was not found.
> rtld: 0712-001 Symbo
> Error: unable to load R code in package 'grDevices'
> Execution halted
> make: 1254-004 The error code from the last command is 1.
>
>
> Stop.
> make: 1254-004 The error code from the last command is 1.
>
>
> Stop.
> make: 1254-004 The error code from the last command is 1.
>
>
> Stop.
> make: 1254-004 The error code from the last command is 1.
>
>
> Stop.
> ---------------------------------
>
> Can you help me?
>
> Thank you in advance.
> FF
>
> -----------------------------------------------------------
> Dr Francesco Falciano
> CINECA
> (High Performance Systems)
> via Magnanelli, 6/3
> 40033 Casalecchio di Reno (BO)-ITALY
> tel: +39-051-6171724
> fax: +39-051-6132198
> e-mail: f.falciano at cineca.it
>
>
>
>
>
> 	[[alternative HTML version deleted]]
>
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> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.
>

-- 
Brian D. Ripley,                  ripley at stats.ox.ac.uk
Professor of Applied Statistics,  http://www.stats.ox.ac.uk/~ripley/
University of Oxford,             Tel:  +44 1865 272861 (self)
1 South Parks Road,                     +44 1865 272866 (PA)
Oxford OX1 3TG, UK                Fax:  +44 1865 272595