[R] RSPython won't load in R 2.6.0 under Linux

Mark W Kimpel mwkimpel at gmail.com
Fri Aug 3 06:19:36 CEST 2007

I can compile RSPython without difficulty, been when I try to load it, I 
get the error messages below. Also below are some cryptic warnings I get 
on R boot (in case these are pertinent) and my sessionInfo().

Any help is appreciated. Thanks, Mark

Warning messages:
1: In .updateMethodsInTable(fdef, where, attach) :
   Couldn't find methods table for "conditional", package "Category" may 
be out of date
2: In .updateMethodsInTable(fdef, where, attach) :
   Methods list for generic "conditional" not found
 > require(RSPython)
Loading required package: RSPython
Error in dyn.load(file, ...) :
   unable to load shared library 
undefined symbol: Rf_initEmbeddedR
 > sessionInfo()
R version 2.6.0 Under development (unstable) (2007-08-01 r42387)


attached base packages:
[1] splines   tools     stats     graphics  grDevices utils     datasets
[8] methods   base

other attached packages:
  [1] affycoretools_1.9.3    annaffy_1.9.1          xtable_1.5-0
  [4] gcrma_2.9.1            matchprobes_1.9.10     biomaRt_1.11.4
  [7] RCurl_0.8-1            XML_1.9-0              GOstats_2.3.8
[10] Category_2.3.18        genefilter_1.15.9      survival_2.32
[13] KEGG_1.17.0            RBGL_1.13.3            annotate_1.15.3
[16] AnnotationDbi_0.0.88   RSQLite_0.6-0          DBI_0.2-3
[19] GO_1.17.0              limma_2.11.9           affy_1.15.7
[22] preprocessCore_0.99.12 affyio_1.5.6           Biobase_1.15.23
[25] graph_1.15.10

loaded via a namespace (and not attached):
[1] cluster_1.11.7  rcompgen_0.1-15


Mark W. Kimpel MD  ** Neuroinformatics ** Dept. of Psychiatry
Indiana University School of Medicine

15032 Hunter Court, Westfield, IN  46074

(317) 490-5129 Work, & Mobile & VoiceMail
(317) 663-0513 Home (no voice mail please)

More information about the R-help mailing list