[R] R-2.3.0 make error

[Wuming Gong]

Dear Peter,

$ uname -a
Linux bl3 2.6.15-1.1833_FC4smp #1 SMP Wed Mar 1 23:55:52 EST 2006
x86_64 x86_64 x86_64 GNU/Linux

When ./configure, I did not claim any options...

Wuming

On 01 May 2006 19:30:48 +0200, Peter Dalgaard <p.dalgaard at biostat.ku.dk> wrote:
> "Wuming Gong" <wuming.gong at gmail.com> writes:
>
> > Dear list,
> >
> > When compiling the R-2.3.0 on FC4 x86_64, I got the following errors:
> >
> > make[3]: Entering directory
> > `/project/scratch3/ligroup/wuming/src/R-2.3.0/src/main'
> > gcc -Wl,--export-dynamic -L/usr/local/lib64 -o R.bin Rmain.o
> > CConverters.o CommandLineArgs.o Rdynload.o Renviron.o RNG.o apply.o
> > arithmetic.o apse.o array.o attrib.o base.o bind.o builtin.o
> > character.o coerce.o colors.o complex.o connections.o context.o cov.o
> > cum.o dcf.o datetime.o debug.o deparse.o deriv.o dotcode.o dounzip.o
> > dstruct.o duplicate.o engine.o envir.o errors.o eval.o format.o
> > fourier.o gevents.o gram.o gram-ex.o graphics.o identical.o internet.o
> > iosupport.o lapack.o list.o localecharset.o logic.o main.o mapply.o
> > match.o memory.o model.o names.o objects.o optim.o optimize.o
> > options.o par.o paste.o pcre.o platform.o plot.o plot3d.o plotmath.o
> > print.o printarray.o printvector.o printutils.o qsort.o random.o
> > regex.o registration.o relop.o rlocale.o saveload.o scan.o seq.o
> > serialize.o size.o sort.o source.o split.o sprintf.o startup.o
> > subassign.o subscript.o subset.o summary.o sysutils.o unique.o util.o
> > version.o vfonts.o xxxpr.o   ../unix/libunix.a ../appl/libappl.a
> > ../nmath/libnmath.a  -lgfortran -lm -lgcc_s  ../extra/zlib/libz.a
> > ../extra/bzip2/libbz2.a ../extra/pcre/libpcre.a  -lreadline -lncurses
> > -ldl -lm
> > ../appl/libappl.a(cmplxblas.o)(.text+0x1100a): In function `zrotg_':
> > /project/scratch3/ligroup/wuming/src/R-2.3.0/src/appl/cmplxblas.f:5579:
> > undefined reference to `z_abs'
> > ../appl/libappl.a(cmplxblas.o)(.text+0x11069):/project/scratch3/ligroup/wuming/src/R-2.3.0/src/appl/cmplxblas.f:5585:
> > undefined reference to `z_abs'
> > ../appl/libappl.a(cmplxblas.o)(.text+0x11079):/project/scratch3/ligroup/wuming/src/R-2.3.0/src/appl/cmplxblas.f:5585:
> > undefined reference to `z_abs'
> > ../appl/libappl.a(cmplxblas.o)(.text+0x110de):/project/scratch3/ligroup/wuming/src/R-2.3.0/src/appl/cmplxblas.f:5586:
> > undefined reference to `z_abs'
> > ../appl/libappl.a(cmplxblas.o)(.text+0x11146):/project/scratch3/ligroup/wuming/src/R-2.3.0/src/appl/cmplxblas.f:5586:
> > undefined reference to `z_abs'
> > ../appl/libappl.a(cmplxblas.o)(.text+0x1116e):/project/scratch3/ligroup/wuming/src/R-2.3.0/src/appl/cmplxblas.f:5588:
> > more undefined references to `z_abs' follow
> > collect2: ld returned 1 exit status
> > make[3]: *** [R.bin] Error 1
> > make[3]: Leaving directory
> > `/project/scratch3/ligroup/wuming/src/R-2.3.0/src/main'
> > make[2]: *** [R] Error 2
> > make[2]: Leaving directory
> > `/project/scratch3/ligroup/wuming/src/R-2.3.0/src/main'
> > make[1]: *** [R] Error 1
> > make[1]: Leaving directory `/project/scratch3/ligroup/wuming/src/R-2.3.0/src'
> > make: *** [R] Error 1
> >
> > Is there any way to fix this problem?
>
> Hmm... It's not happening to me on a similar setup
>
> $ uname -a
> Linux janus 2.6.16-1.2096_FC4smp #1 SMP Wed Apr 19 16:01:54 EDT 2006
> x86_64 x86_64 x86_64 GNU/Linux
>
> gcc -Wl,--export-dynamic -L/usr/local/lib64 -o R.bin Rmain.o
> CConverters.o CommandLineArgs.o Rdynload.o Renviron.o RNG.o apply.o
> arithmetic.o apse.o array.o attrib.o base.o bind.o builtin.o
> character.o coerce.o colors.o complex.o connections.o context.o cov.o
> cum.o dcf.o datetime.o debug.o deparse.o deriv.o dotcode.o dounzip.o
> dstruct.o duplicate.o engine.o envir.o errors.o eval.o format.o
> fourier.o gevents.o gram.o gram-ex.o graphics.o identical.o internet.o
> iosupport.o lapack.o list.o localecharset.o logic.o main.o mapply.o
> match.o memory.o model.o names.o objects.o optim.o optimize.o
> options.o par.o paste.o pcre.o platform.o plot.o plot3d.o plotmath.o
> print.o printarray.o printvector.o printutils.o qsort.o random.o
> regex.o registration.o relop.o rlocale.o saveload.o scan.o seq.o
> serialize.o size.o sort.o source.o split.o sprintf.o startup.o
> subassign.o subscript.o subset.o summary.o sysutils.o unique.o util.o
> version.o vfonts.o xxxpr.o   ../unix/libunix.a ../appl/libappl.a
> ../nmath/libnmath.a -lblas -lgfortran -lm -lgcc_s
> ../extra/zlib/libz.a ../extra/bzip2/libbz2.a ../extra/pcre/libpcre.a
> -lreadline -lncurses  -ldl -lm
>
> Apparently, you are configuring without a BLAS library, but it is not
> like I get into trouble by removing them from my setup. I'm puzzled.
>
> You might check whether you need to upgrade something in your system.
>
>
> --
>    O__  ---- Peter Dalgaard             Øster Farimagsgade 5, Entr.B
>   c/ /'_ --- Dept. of Biostatistics     PO Box 2099, 1014 Cph. K
>  (*) \(*) -- University of Copenhagen   Denmark          Ph:  (+45) 35327918
> ~~~~~~~~~~ - (p.dalgaard at biostat.ku.dk)                  FAX: (+45) 35327907
>