Npmc for doing post-hoc after Kruskal
Farrel Buchinsky
fbuchins at wpahs.org
Sat Mar 4 23:53:39 CET 2006
I followed the threads that enquired about doing post-hoc tests after doing
Kruskal testing. It took me to npmc. But npmc is giving an output I do not
understand.
I noticed a thread entitled "npmc function: 'x' must be atomic" but there
never appeared to be a resolution.
> npmc(npmcinput)
Error in sort(unique.default(x), na.last = TRUE) :
'x' must be atomic
Here is the dataframe I created and called npmcinput
To prove that I have the data set up correctly I ran
> kruskal.test(OtoMax~grp)
Kruskal-Wallis rank sum test
data: OtoMax by grp
Kruskal-Wallis chi-squared = 59.4028, df = 3, p-value = 7.885e-13
grp OtoMax
1 1 0
2 1 1
3 1 0
4 1 1
5 1 1
6 1 1
7 1 1
8 1 1
9 1 1
10 1 2
11 1 1
12 1 1
13 1 1
14 1 1
15 1 2
16 1 1
17 1 1
18 1 1
19 1 2
20 1 2
21 1 0
22 1 1
23 1 1
24 1 2
25 1 1
26 1 1
27 1 1
28 1 2
29 3 4
30 3 4
31 3 2
32 3 2
33 3 2
34 3 3
35 3 2
36 3 2
37 3 2
38 3 3
39 3 2
40 3 2
41 3 4
42 3 3
43 3 2
44 3 4
45 3 3
46 3 4
47 3 2
48 3 2
49 3 2
50 3 3
51 3 2
52 3 3
53 3 0
54 3 4
55 3 2
56 3 2
57 2 2
58 2 2
59 2 2
60 2 2
61 2 2
62 2 2
63 2 3
64 2 2
65 2 2
66 2 3
67 2 2
68 2 2
69 2 2
70 2 2
71 2 2
72 2 2
73 2 3
74 2 2
75 2 3
76 2 3
77 2 3
78 2 2
79 2 3
80 2 4
81 2 2
82 2 2
83 2 2
84 2 2
85 0 1
86 0 1
87 0 0
88 0 1
89 0 0
90 0 0
91 0 0
92 0 0
93 0 1
94 0 0
Subsequently I renamed grp to be "class" and OtoMax to be "var" and
everything seemed to work.
Is that really the way one has to do it? As a general pointer to my overall
R capabilities- does the documentation say that one has to name them class
and var? Has my e-mail transgressed R etiquette?
Farrel Buchinsky, MD --- Mobile (412) 779-1073
Pediatric Otolaryngologist
Allegheny General Hospital
Pittsburgh, PA
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