[R] run-time of an R function
Alexandre Santos Aguiar
asaguiar at spsconsultoria.com
Mon Jan 16 19:30:44 CET 2006
Em Seg 16 Jan 2006 16:02, Rossi, Peter E. escreveu:
> of the function in the same R session, exec time = 7.1 min. Removing all
> objects via rm(list=(all=TRUE)) and initiating gc (gc(reset=TRUE))
> helps, but
> only slightly (exec time = 5.0 min).
Hi,
I am currently using extensively a script with +250 lines that performed the
opposite:
3min 26s as first run
2min 57s in the second run and with several objects in memory
My script performs calculations of bayesian probabilities over 11 variables of
1033 observations, uses no special library, performs several disk writes to a
networked nfs exported directory and does the clean up of all explicitly
created objects.
BTW, I currently use R 2.2.1 and it seems much faster than version 1.9 that I
used before.
--
Alexandre Santos Aguiar, MD
- independent consultant for health research -
R Botucatu, 591 cj 81 - 04037-005
São Paulo - SP - Brazil
tel +55-11-9320-2046
fax +55-11-5549-8760
www.spsconsultoria.com
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