[R] Correct way to test for exact dimensions of matrix or array
Gregory Jefferis
gsxej2 at cam.ac.uk
Tue Jan 10 19:58:49 CET 2006
Thanks for suggestions. This is a simple question in principle, but there
seem to be some wrinkles - I am always having to think quite carefully about
how to test for equality in R. I should also have said that I would like
the check to be efficient as well safe and succinct.
One suggestion was:
isTRUE(all.equal(dim(obj), c(3, 5)))
But that is not so efficient because all.equal does lots of work esp if it
the objects are not equal.
Another suggestion was:
all( dim( obj) == c(3,5) )
But that is not safe eg because dim(vector(10)) is NULL and
all(NULL==c(3,5)) is actually TRUE (to my initial surprise) so vectors would
pass through the net.
So, so far the only way that is efficient, safe and succinct is:
identical( dim( obj) , as.integer(c(3,5)))
Martin Maechler pointed out that at the beginning of a function you might
want to break down the test into something less succinct, that printed more
specific error messages - a good suggestion for a top level function that is
supposed to be user friendly.
Any other suggestions? Many thanks,
Greg Jefferis.
On 10/1/06 15:13, "Martin Maechler" <maechler at stat.math.ethz.ch> wrote:
>>>>>> "Gregory" == Gregory Jefferis <gsxej2 at cam.ac.uk>
>>>>>> on Tue, 10 Jan 2006 14:47:43 +0000 writes:
>
> Gregory> Dear R Users,
>
> Gregory> I want to test the dimensions of an incoming
> Gregory> vector, matrix or array safely
>
>
> Gregory> and succinctly. Specifically I want to check if
> Gregory> the unknown object has exactly 2 dimensions with a
> Gregory> specified number of rows and columns.
>
> Gregory> I thought that the following would work:
>
>>> obj=matrix(1,nrow=3,ncol=5)
>>> identical( dim( obj) , c(3,5) )
> Gregory> [1] FALSE
>
> Gregory> But it doesn't because c(3,5) is numeric and the dims are
> integer. I
> Gregory> therefore ended up doing something like:
>
>>> identical( dim( obj) , as.integer(c(3,5)))
>
> Gregory> OR
>
>>> isTRUE(all( dim( obj) == c(3,5) ))
>
> the last one is almost perfect if you leave a way the superfluous
> isTRUE(..).
>
> But, you say that it's part of your function checking it's
> arguments.
> In that case, I'd recommend
>
> if(length(d <- dim(obj)) != 2)
> stop("'d' must be matrix-like")
> if(!all(d == c(3,5)))
> stop("the matrix must be 3 x 5")
>
> which also provides for nice error messages in case of error.
> A more concise form with less nice error messages is
>
> stopifnot(length(d <- dim(obj)) == 2,
> d == c(3,50))
>
> ## you can leave away all(.) for things in stopifnot(.)
>
>
>
>
> Gregory> Neither of which feel quite right. Is there a 'correct' way to
> do this?
>
> Gregory> Many thanks,
>
> You're welcome,
> Martin Maechler, ETH Zurich
>
> Gregory> Greg Jefferis.
>
> Gregory> PS Thinking about it, the second form is (doubly) wrong because:
>
>>> obj=array(1,dim=c(3,5,3,5))
>>> isTRUE(all( dim( obj) == c(3,5) ))
> Gregory> [1] TRUE
>
> Gregory> OR
>>> obj=numeric(10)
>>> isTRUE(all( dim( obj) == c(3,5) ))
> Gregory> [1] TRUE
>
> Gregory> (neither of which are equalities that I am happy with!)
>
--
Gregory Jefferis, PhD and:
Research Fellow
Department of Zoology St John's College
University of Cambridge Cambridge
Downing Street CB2 1TP
Cambridge, CB2 3EJ
United Kingdom
Tel: +44 (0)1223 336683 +44 (0)1223 339899
Fax: +44 (0)1223 336676 +44 (0)1223 337720
gsxej2 at cam.ac.uk
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